Theobroma cacao (cacao): 18594749
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Entry
18594749 CDS
T02994
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18594749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18594749
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18594749
Spliceosome [BR:
tcc03041
]
Complex C
Other components
Step II factors
18594749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_24
Flavi_DEAD
nSTAND3
AAA_30
T2SSE
AAA_16
AAA_7
NB-ARC
ABC_tran
PhoH
ATPase
Sigma54_activ_2
ResIII
Motif
Other DBs
NCBI-GeneID:
18594749
NCBI-ProteinID:
XP_007022441
UniProt:
A0AB32UY69
LinkDB
All DBs
Position
7:13144929..13154302
Genome browser
AA seq
1279 aa
AA seq
DB search
MESFDVNKTMETLEPEVSNGRGGLFVPKDRPKYVAPIGKKSVLGLDVRANEKRGDSKVDG
GFKVPRENIASIAASIDEDERAESFGVEETKSTVTNGTRSHTSRRYRDKAASATTNAEST
VTVERRGSDDVFGTPRSSEHRSSDVPTSSSRSSRSVSSNRLRHERDERDRERRDFSDDSR
SDSRNARKRHYYEDRRDTHGGYEEYYGRSGSRYESRKRTPGRSDWDDGKWEWEDTPHRDN
YSGSNRRHQPSPSPMFVGASPDARLVSPWMGDRTPRSAGTSSGASPWDYASPSPVPIRAS
GASIKSSSSRYGRTSHQVSFSRESSQSFEDEGDKTGPAEEQNYEITESMRLEMEYNSDRA
WYDREEGNTMFDADSSSVFLGDEASFQKKEAELAKRLVRRDGTRMSLAQSKKLSQLTADN
AQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRIVFTKQAEPIMPIK
DPTSDMAIISRKGSSLVREIHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAE
VGEHGEIDFKEDAKFAQHMKKGEAVSEFAKSKSIAEQRQYLPIYSVRDELLQVIRENQVV
VVVGETGSGKTTQLTQYLHEDGYTINGVVGCTQPRRVAAMSVAKRVSEEMETELGDKVGY
AIRFEDVTGPSTIIKYMTDGVLLRETLKDADLDKYRVIVMDEAHERSLSTDVLFGILKKV
VAQRRDFKLIVTSATLNAQKFSNFFGSVPIFQIPGRTFPVNILYSKTPCEDYVEAAVKQA
MTIHITSPPGDILIFMTGQDEIEAACYALAERIEQLISSTRKGVPKLLILPIYSQLPADL
QAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVS
RAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPAPVPEIQRTNLGNVVLLLKSLKIENL
LDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTDIGWKMVEFPLDPPLAKMLLMGEQLQ
CIDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKANQYRGD
WCNDHFLHVKGLRKAREVRSQLLDILRTLKIPLTSCGYDWDVVRKAICSAYFHNAARLKG
VGEYVNCRNGMPCHLHPSSALYGLGYTPEYVVYHELILTTKEYMQCVTAVEPQWLAELGP
MFFSVKESDTTLLEHKKRQKEEKTAMEEEMENLRKAQAEAERESKEKERQKRAKQQQQVS
MPGLRQGSSTYLRPKKFGL
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggagtcatttgatgtgaataagacaatggaaacattggagcctgaggtgagcaatggc
cgtggtggattgtttgtcccaaaggatagaccgaagtatgtagctcctattggcaagaag
tctgttttaggtttggatgttcgtgctaacgaaaagcgaggagattctaaagttgatggt
ggattcaaggtcccaagggaaaacattgcctccattgcagcatctattgatgaagatgag
agagctgaatcttttggagttgaagaaactaaaagtactgttacaaatggtacccgcagc
catactagcagacgctatcgtgataaggcagctagtgcaacaactaatgctgaaagtaca
gttactgtagaaagacgaggcagcgatgacgtgtttgggactcctcgctcaagtgaacat
aggagttcagatgttccaacttcatctagtcggagttctcgtagtgtctcttctaatagg
ctaagacacgagagagatgaacgtgatagagagagaagagatttcagtgatgattctaga
agtgatagcaggaatgcaagaaaaagacactactatgaggatagaagagacactcatggt
ggatatgaagaatattatggaagaagcggaagtagatatgaaagtagaaagaggacgcct
ggcagatctgattgggatgatgggaaatgggaatgggaagatactcctcaccgggataat
tactctggtagtaacaggcgccatcaaccttctccatctccaatgtttgtcggggcttca
cctgatgctagattagtttctccatggatgggagatcgtactcctcgttcagctggtaca
tcaagtggtgcttctccttgggactatgcatctccttctccagttccaatacgagcctct
ggagcatcaataaaatcttcaagttctagatatggtcggacatctcatcaagttagcttt
tcaagggaaagttcacaatcatttgaggatgaaggagataagacaggtccagcagaagaa
caaaattacgagattacagaaagtatgcgcttggagatggagtataattcagaccgtgca
tggtatgatagagaagaaggaaacaccatgttcgatgctgatagttcatcagttttcctt
ggggatgaagcttcattccaaaagaaagaagcagagttggccaaaagactggttcgaaga
gatgggactaggatgtctcttgctcagagcaaaaagttgtctcagcttaccgctgataat
gctcagtgggaagaccggcagcttttgagatctggagctgttagaggtactgaggtgcaa
actgagtttgatgatgaggatgaacgcaaggtgattcttcttgtacatgatacaaaacct
ccattcttggatggcagaattgttttcaccaaacaagcagagccaatcatgcccataaaa
gatcctacatcagacatggctataatttcacgcaaaggatcttctctggttagggaaatt
cacgagaagcaaagcatgaataagtcacgccaacgattttgggagcttgcaggctctaag
cttggtgatatccttggagttgagaaaacagcagaacagattgatgctgacactgccgaa
gtaggcgaacatggtgaaattgattttaaggaagatgccaaatttgcacagcatatgaag
aagggggaggctgtaagtgaatttgcgaagtccaaaagcatagcagagcagcgacaatac
ttacccatctattcagtgcgagatgagttactgcaggtgattcgagaaaatcaggtagtt
gttgttgtgggtgaaactggctctggaaaaacaactcaacttacacagtatcttcatgaa
gatgggtacaccataaatggtgtagttggttgtacccaacctaggcgtgtggctgccatg
agtgttgcaaaaagagttagtgaagagatggagacggagttgggtgataaagttggctat
gccatacgttttgaagatgtgactgggccaagcaccataattaagtatatgactgatggg
gttctccttcgtgaaacattgaaggatgctgatcttgacaagtatcgcgttattgtaatg
gatgaggcacatgagagatcactaagcacagatgtgctttttggaatattgaaaaaggtg
gttgcccagcgccgtgatttcaagcttattgtgacgtctgcaactctaaatgcgcagaag
ttttcaaatttctttggaagtgtaccgattttccagatccctggtagaacatttcctgtc
aatattttgtacagtaagactccttgtgaggattatgttgaagctgcagtgaagcaggcc
atgactattcacatcaccagccctccaggtgacatcctcatctttatgactggccaagat
gagattgaggcagcttgttatgcccttgcagaacgaatagaacagcttatttcctcgact
aggaaaggggtgcctaaacttctgatactcccaatatactcccagttacctgctgatttg
caagcaaagatattccagaaggctgaagatggagctcgcaaatgcattgttgccaccaat
attgctgagacatccttgaccgtagatggaattttttatgttattgatactggttatggt
aaaatgaaagtctataaccctaagatgggtatggatgctcttcaagttttccctgttagt
cgtgctgctgctgaccagcgtgcgggacgtgctggtagaactgggccaggtacatgttat
aggttgtatacagagagtgcttacttgaatgagatgctgcctgctcctgtacctgagata
cagaggaccaaccttggcaatgtggtgttgctgctcaagtctcttaaaattgagaacttg
ctagattttgatttcatggatccaccaccgcaggaaaatatccttaattctatgtaccag
ttatgggtcctgggtgcacttaacaatgttgggggcttgactgacattggatggaaaatg
gtggagttcccattggatcccccacttgcgaagatgctgttgatgggtgaacagctacaa
tgcatagatgaggttttgaccattgtttcaatgctttcggtcccatcagtgtttttccga
cctaaggatagagcggaagagagtgatgcagcaagggaaaaattttttgtaccagaatct
gatcacttaacattgcttaatgtttaccagcagtggaaagctaatcagtatcgaggagac
tggtgtaatgaccattttctgcatgttaaagggttgaggaaagccagagaggtgaggtct
cagctattagatattctcaggacactgaaaatcccactaacatcctgtggatatgattgg
gatgttgtaaggaaagctatctgttctgcatactttcacaatgctgcaagattaaagggt
gttggggagtatgttaattgcaggaatggaatgccgtgccatttgcacccgagcagtgct
ctttatggtttgggttatactccagagtatgttgtttatcatgaattgattttgacaaca
aaggagtacatgcagtgcgttacagcagtggagccacagtggctggctgaactaggtccc
atgttcttttctgtgaaggagtcagatacaacattgttagagcataagaaaagacagaag
gaggagaaaactgccatggaggaggaaatggaaaatttgaggaaggcgcaagccgaggca
gagagagaaagcaaggagaaggagaggcagaagagggcaaagcagcagcaacaagtttca
atgcctgggttgcgacagggctcttctacttatctaagaccgaagaagttcggtttgtaa
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