KEGG   Theobroma cacao (cacao): 18595237
Entry
18595237          CDS       T02994                                 
Name
(RefSeq) pre-mRNA-splicing factor SPF27 homolog
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18595237
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcc03041]
    18595237
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18595237
Spliceosome [BR:tcc03041]
 Complex B
  Other components
   Prp19 complex
    18595237
 Complex C
   Prp19-CDC5 complex
    18595237
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    18595237
SSDB
Motif
Pfam: BCAS2 ORC3_ins FUSC HMMR_N Plk4_PB2
Other DBs
NCBI-GeneID: 18595237
NCBI-ProteinID: XP_007023159
UniProt: A0AB32UZK3 A0A061G890
LinkDB
Position
6:1917325..1922041
AA seq 253 aa
MGGNGGEILMLEAPPEAARPWASASSAEILDALPYIDDDYGNPKVKEEVDRLVEEEMRRS
TKKPADFLKDLPPLPSFNFQNHPMVGKEYERVRAGRPPVTLDFSSRYQVETPAINKRNDE
GSWKQALHRSQRSLQHQVIRLENLELMLKYGPDVWKHNNQRLEGFLARMQKLAQQQNDQI
ETVNRERKYHQQNTAYELNALSAQWKELCLKNIEIHSACAHIENHIEELRREAAERGWNL
EANLENGALSPSG
NT seq 762 nt   +upstreamnt  +downstreamnt
atgggtggcaacggcggagagatccttatgttggaggcaccgccggaggctgctcggccg
tgggcctctgcttccagtgcggagattttggacgcattaccctacatagacgacgactac
gggaaccctaaggttaaggaagaggttgatcgattggtagaggaagagatgcgtaggagt
accaagaagcccgcggacttcctcaaggatttgccccccctgcccagctttaattttcag
aatcaccccatggttggcaaagagtatgagcgggtaagagcggggaggccacccgtgacc
cttgatttttcctcgcgctatcaagtggaaacaccggccatcaataagagaaatgatgag
ggttcttggaagcaggcacttcacagatctcagcgctctttacaacatcaagtcattagg
ttggagaatttggagttgatgttaaaatacggccctgacgtttggaaacataacaaccaa
cggttggaagggtttttggccagaatgcaaaaattagctcagcagcaaaatgaccaaatt
gaaactgtaaaccgtgaaagaaaatatcatcagcaaaatactgcctacgaactcaacgct
ttatctgcacaatggaaggagctttgtctgaaaaacatagaaattcattctgcatgtgct
catattgaaaatcatatagaagaattgaggagagaagctgctgagagaggctggaacttg
gaagctaatttagagaatggtgctttgtcaccttcaggatag

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