Theobroma cacao (cacao): 18595240
Help
Entry
18595240 CDS
T02994
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03013
Nucleocytoplasmic transport
tcc03015
mRNA surveillance pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18595240
09122 Translation
03013 Nucleocytoplasmic transport
18595240
03015 mRNA surveillance pathway
18595240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18595240
03041 Spliceosome [BR:
tcc03041
]
18595240
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18595240
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18595240
Spliceosome [BR:
tcc03041
]
Complex C
Other components
EJC/TREX
18595240
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
18595240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
18595240
NCBI-ProteinID:
XP_007023163
UniProt:
A0AB32UYQ5
A0A061G7G0
LinkDB
All DBs
Position
6:complement(1930347..1935870)
Genome browser
AA seq
427 aa
AA seq
DB search
MGEIKDNDAYEEELLDYEEEDEKAPDSVSAKAADSAKKGYVGIHSSGFRDFLLKPELLRS
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVSVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLGELEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSSDSDVLNQVQARFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaataaaggacaacgacgcttacgaggaagagcttctggactacgaagaagaa
gatgaaaaagcccctgactcggtctccgctaaggccgctgattctgccaagaaggggtat
gttggaattcacagttcgggattcagagacttcctgctgaaaccagagctgcttcgctct
attgtggattctggatttgaacatccatccgaagttcaacatgagtgcatccctcaagct
attctgggaatggatgtcatttgccaagcaaaatctgggatggggaaaacagctgttttt
gttctatcaactcttcagcaaatcgagccagttgctggtcaagttgcggctcttgttcta
tgccatacaagagaattagcttaccagatttgccacgagtttgagaggttcagtacttat
ttgccagatattaaagtttctgtcttctatggtggtgtcaatatcaaggttcacaaggat
ttgctaaagaatgaatgtccccatattgttgttggaacacctggaaggatattggctctt
gctagggataaagatcttagtttgaagaacgtgaggcattttatacttgatgaatgtgac
aagatgcttgagtcacttgacatgaggagagatgtgcaagagatcttcaagatgacccca
catgataagcaagttatgatgttttcagctacacttagcaaggaaattcgacctgtgtgc
aaaaaatttatgcaagatccaatggaaatttatgttgatgatgaagccaagttgactctt
catggtctggtacagcattatattaaattgggtgagttagagaaaaatcgcaagttgaat
gacctccttgatgccttggatttcaaccaagtagtcatttttgttaaaagtgtgagcaga
gcagctgagctcaacaagttactggtggagtgcaatttcccctctatttgcatccactct
ggaatgtcccaggaagaaaggttgacacgatataagagtttcaaggaggggcacaaaaga
attcttgtggcaacagatttagttggaaggggaattgatattgagcgtgtgaacattgta
atcaactatgacatgccagactctgctgatacctacttgcacagggtgggtagagctggt
agatttggcaccaagggtcttgcaattacgtttgtctcatcttcatctgactctgatgtc
ctgaatcaggttcaggcaaggtttgaggtggatataaaggagcttcctgagcaaattgat
acttctacatacatgccttcatga
DBGET
integrated database retrieval system
