Theobroma cacao (cacao): 18596045
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Entry
18596045 CDS
T02994
Name
(RefSeq) polyadenylate-binding protein 6
KO
K13126
polyadenylate-binding protein
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03015
mRNA surveillance pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18596045
09123 Folding, sorting and degradation
03018 RNA degradation
18596045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18596045
03041 Spliceosome [BR:
tcc03041
]
18596045
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
18596045
mRNA cycle factors
Stress granule specific factors
18596045
Spliceosome [BR:
tcc03041
]
Complex C
Other components
Complex C specific factors
18596045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RBD_DEAH11
RRM_5
RRM_RdRP1_2
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
18596045
NCBI-ProteinID:
XP_007024350
UniProt:
A0AB32V067
LinkDB
All DBs
Position
6:18512131..18516910
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AA seq
577 aa
AA seq
DB search
MPSAPPPSLSLPPLPLPLPATTVAGGDWNPLQRASLYVGDLDPDVTELDLFRIFSTVAPI
VSLRLCRCLRTGKSLRYGYINFFSDAHASKALACLNHTDLKGKPVRIMWSHRDPFPRKIG
LANLFVKNLDPTVTSARLEGIFCRFGTILSCKVAEENGKSKGFGFVQFDSEESAKAAITA
LHGTMLEGKKLYVSKFVKKSERTAAAEEEKFTNLYVKNLVDGMTEDLLEEMFSRYGKVCS
VVVMKDGKGSSRGFGFVNFQSPDDAKKALEAMNGVQLGSKNLFVGRAQKKAERTELLKHK
YKDVFNSRFEKLKASNLYVKNLNVSIDDKKLRELFGQFGKITSARVMRYDNGMSKGFGFV
CFSCHREAMSALHGLNGTFFEGRNLYVAVAQRKEDRRLELQNYFVQNTPVQSSYQASCKA
VSPQFCPFYFSIPPCPPLFPLQPQPTLSQNSITNVGIQYPFATSHDQQNFSYDLMRNMHP
CNAGIRRDWVCRQSPMTYANPDVRIQDLGRGNSGNKKVGFRKKGNRKYEPAEKSSVAVAA
IQSVAAASPGSSKKNNENLSCPFVENLERRLQESYWR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagcaccaccgccatcgttgtctcttccacctctgccgctgccactaccagcg
acaacagtcgcaggaggggattggaatcctctgcaaagagcgtcattgtacgtgggtgat
ttggacccggatgttacagagcttgacctctttcgcatattctctaccgttgctcccatt
gtctctcttcgcctttgccgatgtctccgtaccggaaagtctcttcgttacggttatata
aacttcttctctgatgctcatgcatctaaagctttagcttgtctaaaccacactgacctg
aagggaaaaccagtgaggataatgtggtctcatagagatcctttccctagaaagattggt
cttgccaatctctttgtcaagaacctggaccctactgtcactagtgctcgcttggaggga
atcttctgtcgatttgggactattctttcttgtaaggttgctgaagaaaatggcaagagt
aaaggttttggatttgtgcagtttgattcagaagaatcagctaaggctgccataaccgct
ctccatggtactatgcttgaagggaagaagttatatgtgtccaaatttgtcaagaagagt
gagaggacagcagctgctgaagaagagaagttcactaatctatatgtgaaaaacctggtt
gatggcatgacagaggatctccttgaagaaatgttttctagatatgggaaggtttgcagc
gttgtagtcatgaaggatggcaaggggagctcaagaggttttgggtttgtcaactttcaa
tccccagatgatgctaagaaagctctggaggcaatgaatggtgtacaactgggttcaaag
aatttgtttgttggaagggctcaaaagaaggctgaaaggacagagctattgaaacataag
tacaaggatgtattcaacagccgctttgagaaattgaaggcttcaaatctctatgtgaag
aacctcaatgtatccattgatgacaaaaaattacgagaactttttggtcagtttggaaaa
ataacctcagcaagggtgatgcgctatgataatgggatgagtaagggatttggctttgtg
tgcttctcctgtcatagagaagcaatgtcagctttacatgggcttaatggaacctttttt
gagggaaggaatctgtatgtggcagtagctcagcgcaaagaagatcgccgcttggaattg
cagaactactttgtgcaaaacaccccggtacagtcctcatatcaagcaagttgcaaggcc
gttagccctcagttctgcccattttacttcagtatccctccttgccctcctcttttccct
ctgcagccgcagccaaccttatcacagaatagtattacaaatgtgggcattcagtatcct
tttgcaacatcacatgaccagcaaaacttctcatacgatcttatgagaaacatgcatcca
tgcaatgctgggatcagaagagattgggtgtgcagacagagtcctatgacatatgctaac
cctgatgttcgaatccaagacctgggccgtgggaattctgggaataagaaagtaggcttc
aggaagaaggggaacagaaagtatgaacctgcagaaaaatcctctgtagcagtagcagct
attcaatctgttgctgcagcatcccctggaagctctaagaagaacaatgaaaatttatct
tgcccatttgtagagaatcttgagcgaaggttacaggagagctattggagataa
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