Theobroma cacao (cacao): 18596112
Help
Entry
18596112 CDS
T02994
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18596112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18596112
03009 Ribosome biogenesis [BR:
tcc03009
]
18596112
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18596112
Spliceosome [BR:
tcc03041
]
Complex A
U1 snRNP components
U1 related factors
18596112
Complex B
18596112
Ribosome biogenesis [BR:
tcc03009
]
Eukaryotic type
Pre-60S particles
Helicases
18596112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
18596112
NCBI-ProteinID:
XP_007024450
UniProt:
A0AB32V0K7
LinkDB
All DBs
Position
6:19055256..19061475
Genome browser
AA seq
505 aa
AA seq
DB search
MSRYDSRSGDPTSYRDRRSDSGFGGASAYGGSMRSSSSRRDYDGAEPPRKLDLDGLTPFE
KNFYVESPLVAAMSATEVEEYRQRREITVEGRDVPKPVKSFRDMGFPEYVLQEITKAGFV
EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAP
TRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH
HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVIIGSADLKANHAIRQHVDIVPESQKYSKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRRLRLDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIVILEEAGQKVSPELAAMGRG
APPPPSGHGGFRDRGRGYGSSRPRS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatatgatagccgctccggcgatcccacctcctaccgcgaccgtaggagtgac
tcagggtttggtggggcttcagcatatggcggttcgatgcggtcctcgtcgagcagaagg
gattatgatggtgctgaaccacctaggaagttggatttggatggattgactccttttgag
aagaatttttatgttgagtcgccattggtggcggcaatgtcggcaacagaggtggaggag
tatcggcagcggagggaaattactgttgaaggtcgcgatgttccgaagcctgtaaagagt
tttcgcgacatgggatttccagagtatgtactgcaagaaatcacaaaagctggctttgtt
gaaccaacacctatacaagctcaaggttggccaatggctttgaagggccgtgacctcatt
ggtattgcagaaactggctcggggaagactcttgcctatttattacctgcaattgtccat
gttaacgcgcaaccaattttagctcctggagatggcccaattgtattagttttagctcca
acgcgtgaacttgcggttcaaatacaacaagaggctgctaaatttggtgcatcatctagg
atcaagaatacatgcatatatggtggggttcccaagggacctcaagtgcgtgatctccag
aaaggtgttgagattgttattgctacacccgggaggttaatagatatgttggagtcgcat
cacacaaacttgcgaagagttacttatctagtcttggatgaggcagatcggatgttagat
atgggatttgagcctcagatacgaaaaattgtttctcagatccgtcctgaccgccaaaca
ttgtactggagtgcgacttggccaaaggaggttgaacagttggcaaggcagtttctttac
aacccatacaaagtgataattggatctgcagatttaaaagctaaccatgcaattcgccaa
catgttgacattgttcctgagagtcagaaatatagcaaattggtgaagctgctggaggat
atcatggatggtagcagaattttgattttcatggataccaagaaaggttgtgaccagatc
actcggcgacttcgcttggatggttggcctgctctctcaattcatggagataaaagtcaa
gcagaaagggattgggtcctctcagagtttaaagctggcaagagccctataatgactgca
acagatgttgcagctcgtggtttagatgtgaaagatgtgaaatatgtaatcaattatgac
ttcccgggatcgctagaggattatgtccaccgtattggtcgaacaggaagagctggagca
aaaggaactgcctatactttcttcacagctgcaaacgccagattcgcaaaagaacttatt
gtcatacttgaggaagctggacaaaaggtcagccctgaattggcagcgatgggacgtggt
gcacctcctccaccatcaggtcacggtggtttccgagaccgaggtaggggttatggtagc
agccgcccgcggagctga
DBGET
integrated database retrieval system
