KEGG   Theobroma cacao (cacao): 18596249
Entry
18596249          CDS       T02994                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18596249
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18596249
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     18596249
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     18596249
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 18596249
NCBI-ProteinID: XP_017979087
UniProt: A0AB32WI83
LinkDB
Position
6:20223841..20227125
AA seq 128 aa
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACDRVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTCVSAAEIRRAQKAEREARDLKGTMRK
RMEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaggccctgaagatatctacctttctacttctcttgccagttatcttgac
aaaaaacttttagtgctgctgcgggatggtcgaaagctaatgggaacattacgttctttt
gaccaatttgccaatgctgttcttgagggtgcttgtgacagagttattgttggcgatctt
tattgcgacattcctttaggtctatatgtaatccgtggggagaatgttgtcttgattggt
gagctggacttggagagagaggaacttcctccgcatatgacttgtgtttcagcagcagaa
attagaagggcacagaaagcagaaagggaggcaagagatctgaaaggtacaatgaggaaa
cgaatggagttccttgatttggactaa

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