Theobroma cacao (cacao): 18596249
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Entry
18596249 CDS
T02994
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18596249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18596249
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18596249
mRNA degradation factors
5'-3' decay
Lsm complex
18596249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
18596249
NCBI-ProteinID:
XP_017979087
UniProt:
A0AB32WI83
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All DBs
Position
6:20223841..20227125
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACDRVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTCVSAAEIRRAQKAEREARDLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggccctgaagatatctacctttctacttctcttgccagttatcttgac
aaaaaacttttagtgctgctgcgggatggtcgaaagctaatgggaacattacgttctttt
gaccaatttgccaatgctgttcttgagggtgcttgtgacagagttattgttggcgatctt
tattgcgacattcctttaggtctatatgtaatccgtggggagaatgttgtcttgattggt
gagctggacttggagagagaggaacttcctccgcatatgacttgtgtttcagcagcagaa
attagaagggcacagaaagcagaaagggaggcaagagatctgaaaggtacaatgaggaaa
cgaatggagttccttgatttggactaa
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