Theobroma cacao (cacao): 18596255
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Entry
18596255 CDS
T02994
Name
(RefSeq) oligouridylate-binding protein 1B
KO
K13201
nucleolysin TIA-1/TIAR
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18596255
03041 Spliceosome [BR:
tcc03041
]
18596255
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
18596255
Spliceosome [BR:
tcc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
18596255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_5
RRM_7
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
18596255
NCBI-ProteinID:
XP_007024681
UniProt:
A0A061GD25
A0AB32V0Q5
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All DBs
Position
6:20270229..20275571
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AA seq
421 aa
AA seq
DB search
MQHQRLKQQQQALMQQALLQQQSLYHPGILAPPQIEPIPSGNLPPGFDPSTCRSVYVGNI
HTQVTEPLLNEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPI
KVNWAYASGQREDTSGHFNIFVGDLSPEVTDAMLFACFSVYPSCSDARVMWDQKTGRSRG
FGFVSFRNQQDAQSAINDLSGKWLGSRQIRCNWATKGAGTNDDKQSSDAKSVVELTNGSS
EDGKETTNSEAPENNPQYTTVYVGNLAPEVNQLELHRHFHALGAGVIEEVRIQRDKGFGF
VRYSTHTEAALAIQMGNTQSFLCGKQIKCSWGSKPTPPGTSSTPLPPPAAAPLPGLSATD
LLAYERQLAMSKMGVHALMHPQGQHPLKQAAMGVGAAGASQAIYDGGFQNVAAAQQLMYY
Q
NT seq
1266 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaccagaggctgaagcaacagcaacaagccttgatgcaacaagctctcctccaa
caacagtctctctaccacccaggcatcttagctcctcctcagatagagccaatcccaagt
ggaaatctgcctcctggttttgatccaagtacttgccgcagtgtgtatgtgggaaacatc
catacacaagtgacagaaccactacttaatgaggtttttgcaagtactggtcctgttgaa
ggttgcaagctcatcagaaaggaaaagtcatcatatggattcatccactacttcgatcgc
agatcagctgctcttgctatattgtctcttaatggaaggcatttatttggacagcctatc
aaggtcaattgggcatatgctagtggtcaaagagaggatacatcaggtcactttaacatt
tttgttggtgatctcagtcctgaggttactgatgcaatgctgtttgcatgcttttctgtc
tatcctagttgttcggatgcaagggttatgtgggatcagaaaactgggcgttcaagagga
tttgggtttgtttcattccgcaaccagcaggatgcacaaagtgcaataaatgatttaagt
ggaaagtggcttggtagccggcagattcgttgtaactgggcaacaaagggtgctggtacc
aatgatgacaagcagagctctgatgccaaaagtgtggtggaactaaccaatggctcatca
gaggacggtaaagagacaaccaatagtgaggctcctgagaataatcctcaatatactact
gtttatgtgggcaatcttgctccagaggtcaaccaacttgaactccaccgccacttccat
gctcttggtgctggggtgattgaggaggttcgaatccagcgtgataaaggctttggtttt
gtgagatacagtactcatactgaggcagctttggctattcagatggggaacactcagtcg
tttctctgtggcaagcaaattaagtgctcttggggcagtaagcctacaccaccagggaca
agttcaactccacttcccccacctgcagctgcacctttacccggcctttcagccacagac
cttttagcttatgagcgacaacttgccatgagcaaaatgggtgttcatgccctaatgcat
ccccagggacagcatcctcttaagcaggcagcaatgggagtgggtgctgctggagcaagc
caggctatatatgatggtgggttccagaatgttgctgctgcccagcagctaatgtactat
cagtaa
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