Theobroma cacao (cacao): 18596855
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Entry
18596855 CDS
T02994
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03020
RNA polymerase
tcc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
18596855
09124 Replication and repair
03420 Nucleotide excision repair
18596855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18596855
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18596855
Enzymes [BR:
tcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18596855
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
18596855
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
18596855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
18596855
NCBI-ProteinID:
XP_007025631
UniProt:
A0A061GFS1
A0AB32V0S5
LinkDB
All DBs
Position
6:23853350..23861422
Genome browser
AA seq
1189 aa
AA seq
DB search
MEDDSEYDPQLMDDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLV
AKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSIS
LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALH
KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEPPKDQKKKGA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacagtgagtacgatccgcaacttatggacgacgaagacgacgaggagatc
acgcaggaagacgcgtgggcggttatctcagcttacttcgaagaaaaaggtctggtgcgt
caacagctcgactcgttcgatgaatttatccaaaacactatgcaagaaatcgtcgacgaa
tcggccgatattgagatcaggccagagtcacagcacaatcctggtcaccagtccgacttt
gctgagactatctataagattagctttggtcagatctaccttagtaaacctatgatgacc
gagtcagatggtgaaactgcaactttatttccaaaagctgcaaggttgaggaatcttact
tactcagctccattgtatgtcgatgtaactaagagagttataaagaaagggcatgatggt
gaagaagtcactgagactcaggattttactaaagtgttcattgggaaggttcctataatg
ctccggtcaagttattgcacactatatcaaaattcagagaaggatctgaccgagcttggg
gagtgtccatatgatcaaggtgggtatttcattatcaatgggagtgaaaaggttctaatt
gctcaggagaagatgagcacaaatcatgtctatgtcttcaaaaagaggcagccgaacaaa
tatgcctatgtggcagaagttcggtccatggcagagtcccagaataggccaccaagtacc
atgtttgtgcggatgctttctcggactagtgccaaagggggctcttcggggcagtacatt
cgtgctactcttccatatattcggactgaaattcctatcataattgtctttcgggctttg
ggatttgttgctgacaaggacatattagagcatatatgctatgacttctccgacacccag
atgatggagttgcttaggccttccttagaagaagcatttgtgattcaaaaccagcaggtt
gcactagattatattggtaaaagaggagcaactgttggtgttaccagagaaaagaggatt
aagtatgctaaagagatcctccaaaaagaaatgcttcctcacgtaggtgttggagatttt
tgcgagacaaagaaagcttattattttggatatattattcaccggctgcttctttgtgca
cttggccggagggcggaagatgatagagatcattatggcaacaagaggttggaccttgct
ggtccattacttggaggcctctttagaatgctttttcggaagttaactagggatgtgaga
tcttatgtgcagaagtgtgttgataacgggaaggatgtgaacctgcaatttgctatcaaa
gcgaaaactattacaagtggtcttaaatactcacttgctactggaaattgggggcaagca
aatgcagctggtactagagctggagtgtcacaggtgttaaaccgtttgacatatgcctca
actttgtcacacttgcgaaggctcaattctcctataggacgtgaagggaaattggctaaa
ccacgtcagttgcataattcacagtggggaatgatgtgtccagcggaaacaccggaagga
caggcctgtggacttgtaaagaatcttgccttgatggtatacataactgtcggatcagct
gcatatcctattcttgaatttttggaagagtggggtacggagaattttgaggaaatctca
cctgcagttatccctcaagctacaaaaatttttgtcaatggttgctgggttggtgtacat
cggaatcctgatatgcttgtgacaacattgagacggttgagaagacgggttgatgtcaat
actgaagttggtgttgttagagatatccgtctaaaagaacttcgaatatatactgactat
ggtcgttgcagtcgaccattgttcatcgtggagaaacaaagacttctcataaagaagaaa
gatattcatgcactgcaacaaagagaaagcccagaagacggtggctggcatgatcttgta
gcaaagggatttatagaatacattgacacggaagaagaggagacaacaatgatttccatg
accatcaatgatcttgtacaagcgagagtcaatccagaggaagcttattctgaaacttat
acccattgtgagatccacccttcattgattttgggtgtttgtgcttcaattataccattt
cctgatcataatcagtccccgcgtaatacctatcaatctgctatgggtaagcaagcaatg
ggaatatatgttaccaactaccaatttcgaatggatacattggcctatgttctctattat
ccccaaaagccacttgttactacacgagctatggaacatctccactttcggcagcttcca
gctggcattaatgctattgttgctatcgcctgctattctggatataaccaagaagattct
gttattatgaatcaatcatcaatagaccgtggattcttccgatcacttttcttccgctct
taccgagatgaggagaaaaaaatggggacccttgttaaagaagattttggtcgaccagat
agggctaatactatgggaatgaggcatggctcttatgataaattggatgatgatggtctt
gcacctcctggaacaagagtttcaggtgaggatgtaatcatcggaaagaccaccccgatt
tctcaggaagaagctcagggacaagcatcacgctattcaagacgtgatcatagcataagc
ttacgtcacagtgaaacaggcatagtggaccaagttctattgacaactaatgctgatggg
ttgagatttgtgaaagtaagggtaagatctgttcgcattccccagattggggacaagttt
agcagtagacatggtcaaaaggggacagtgggcatgacatacacgcaggaagacatgcct
tggactgtggaaggcatcacacccgatatcattgtgaacccacatgctattccttctcga
atgacaattggtcagcttattgaatgtatcatggggaaagttgcagctcacatgggcaag
gaaggggatgccactccttttacagatgtcaccgtggacaatatcagcagagctcttcat
aaatgtggatatcaaatgcgtggttttgagaccatgtataatgggcacacaggcaggcgc
ctttctgctatgatatttttggggcccacatattaccaaagactaaagcacatggttgat
gataagatccattctcgtggtcggggccctgtgcagatcctgacaaggcagcctgcagag
ggacgatcccgtgatggtggtctccgtttcggagagatggaaagagattgcatgattgcg
catggtgctgctcatttccttaaagagagattgtttgaccaaagtgatgcatacagggtc
catgtgtgcgagcgttgtgggttgattgctattgcaaatctaaagaagaactcatttgag
tgcagaggatgcaagaataaaactgatattgttcaggtatacattccttacgcctgtaag
ctgctcttccaagagcttatggccatggcaattgctccaagaatgctcacaaaggaacct
cccaaagaccaaaagaagaaaggagcctga
DBGET
integrated database retrieval system
