Theobroma cacao (cacao): 18596941 Help Entry 18596941          CDS       T02994                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism tcc  Theobroma cacao (cacao) Pathway tcc03040   Spliceosome Brite KEGG Orthology (KO) [BR:tcc00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     18596941  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:tcc03019]     18596941    03041 Spliceosome [BR:tcc03041]     18596941 Messenger RNA biogenesis [BR:tcc03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      18596941 Spliceosome [BR:tcc03041]  Complex B   Other components    Prp19-related factors     18596941  Complex C     18596941 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf Mad3_BUB1_I TPR_15 TPR_19 ARM_TT21_C NRDE-2 Motif Other DBs NCBI-GeneID:  18596941 NCBI-ProteinID:  XP_017978688 UniProt:  A0AB32WL70 LinkDB All DBs Position 6:complement(24338110..24342377) Genome browser AA seq 913 aa AA seqDB search MSLPKELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSDAPFKKRFIIYERALKALPGSY KLWHAYLRERLEIVRNLPVTHPQYETLNNTFERALVTMHKMPRIWIMYLLTLTEQKLISK TRKTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL VNSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEVSGLNVDAIIRGG IRKFTDEVGRLWTSLADYYIRRNLFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV ALKMESIDLSDEEEDDDVEEDEHEEDIRLDIDLCKSKSKFEKHIFKGFWLHDDKDVDLRL ARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKLFEGKPTKQILTYTEAVRTIDPMKAV GKPHTLWVAFAKLYETYKDLANARVIFDKAVQVNYKTVDHLASVWAEWAEMELRHKNFKG ALELMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTRAVYE RILDLRIATPQIIINYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRY GKTKLERARELFEHAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEK LGMYEIYIARAAEIFGVPKTREIYEQAIESALPDKDVKTMCLKYAELEKSLGEIDRARGI YVFASQFADPRSDADFWDKWREFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQ KDQNIDEAKEKLKQAGISEDEMATLERQLLPAANDSSREVGFVSAGVESQADGGMKTTAN HEDIELPEESDSEDEERVEIAQKDVPSAVFGGLVRKREDSDKDGGGGDVSAANDKDGESR LGALERIKRQKRA NT seq 2742 nt NT seq  +upstreamnt  +downstreamnt atgtcgctgccaaaggagctatatccatcccaagatgatcttctctacgaagaagaactt ttgagaaacccattcagtttaaagctgtggtggaggtatctaatagctagatcagatgct cctttcaagaaaagatttataatttatgaacgagctttgaaagctttaccgggtagttac aagctttggcatgcttatttgcgggaacgtcttgaaattgttcggaatttgcccgtcact caccctcagtatgaaacccttaacaatacgttcgagagagcgcttgttacaatgcataag atgcctaggatttggataatgtacttgttgacattaacggaacagaagttgattagtaag acacgtaagacgtttgatagggcgctctgtgctttaccagtgactcaacatgataggatt tgggagccttatttggtttttgtgagtcaaaagggtatccccattgagacgtctcttagg gtttacaggaggtatttgaagtatgatcctagtcatattgaggattttattgagtttttg gtgaattcaagtctgtggcaagaagcagctgagaggttagcatctgttttgaatgatgat cagttttattcgataaagggtaaaactaagcatagattgtggttggagttgtgtgatttg ctaacaacgcatgccacagaggtctcggggctcaatgtggatgcaataatcaggggtggg attaggaagtttaccgatgaagttgggagactttggacttctcttgctgattattacatc agaagaaatctgtttgagaaggccagggatatttttgaggagggaatgacaacagtggtt acggttagggacttcagtgtcatttttgatgcttattcacaatttgaagagagcatggtg gctctcaagatggagagcattgatttgagcgatgaggaagaggatgatgatgttgaggag gatgaacacgaagaagacatccgtttggacattgatctgtgcaagtcaaaatccaagttt gagaagcatatatttaaagggttttggttacatgatgataaggatgtagatttgaggctg gctcggttagagcatttgatgaatagaaggccagaactggctaatagtgtccttctgcgc cagaatccacataatgtggagcaatggcatcgtagggtcaagttatttgaggggaagccc accaagcaaatattgacatacacggaggcagttaggacaattgacccaatgaaagctgtc gggaaaccccatactctgtgggtggcttttgcgaagctttatgagacttacaaagatctg gccaatgctcgtgtcattttcgataaagctgtccaagtaaattacaagactgttgatcac ctggcaagtgtatgggctgagtgggcagagatggaactgaggcacaagaatttcaaaggt gcacttgagctgatgagacgtgccacagctgagccttctgttgaggtcaaacgtagagtt gctgctgatggaaatgaacctgttcagatgaagctccataaatccttaaggctctggaca ttctatgtggacttggaagaaagcctgggtactttggagtcaacacgagcagtctatgag agaatactagatctaagaatagctacaccgcaaattattataaactatgcatttttgtta gaggagaacaaatattttgaagacgctttcaaagtgtatgaaagaggtgtcaagatattc aagtatcctcatgtgaaggatatatgggtcacatatctgtcaaagttcgtaaagagatat gggaaaacaaaactggaacgagcaagggagctttttgagcatgctgttgaaacagcacct gcagatgcagtaaaacccctgtatcttcaatatgcaaagttggaggaggattatgggctt gcaaagcgagctatgaaggtctatgatcaagcaactaaggctgttccaaataatgaaaag cttggcatgtatgagatttacattgctcgtgcagctgaaatctttggtgttccaaaaaca agagaaatttatgagcaggcaatagagtctgctcttcctgataaagacgtgaagacaatg tgtttgaaatatgcagagttagaaaagagcttaggagaaattgatcgtgctcgtggaata tacgtatttgcatctcagtttgcagatccacgctctgatgctgatttttgggataaatgg cgagagtttgaggtgcaacatggaaatgaagataccttcagagaaatgttgcggattaaa cggagtgtttctgcaagttatagccagacacacttcattctaccagagtatctgatgcag aaggatcagaacatcgatgaagctaaggaaaaattgaaacaggctggtatctctgaggat gaaatggctactcttgagaggcagttgttacctgcagcaaatgacagctctagagaagta ggctttgtgagtgctggagtcgagtcacaggcagatggagggatgaaaacaacagcaaat catgaagatattgagttgcctgaagaaagtgattctgaagatgaagaaagagttgaaatt gcacaaaaagacgttccatctgccgtgtttggaggtcttgtacggaagagagaagacagt gacaaagatggaggtggaggtgatgtctcagctgccaacgacaaagatggtgagagccgt ctgggcgcacttgagcgaattaaaaggcagaagcgagcttaa

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