Theobroma cacao (cacao): 18596963
Help
Entry
18596963 CDS
T02994
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
18596963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tcc04121
]
18596963
Ubiquitin system [BR:
tcc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
18596963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
18596963
NCBI-ProteinID:
XP_007025805
UniProt:
A0AB32V1L8
LinkDB
All DBs
Position
6:24437926..24443330
Genome browser
AA seq
586 aa
AA seq
DB search
MESCELKRFKDSPNSDESARRSSFPDEVLERVLSLLKSHRDRSSVSLVCKDWYNAERWSR
AHVFIGNCYSVSPEIVARRFPKIRSVTLKGKPRFSDFNLVPQNWGADIHAWLVVFAAKYP
FLEELRLKRMTISDESLEFLAVSFPNFKALSLLSCDGFSTNGLAAIATHCKNLTELDIQE
NGIDDKGGSWLSCFPESFTSLEALNFANLTSDINFDALERLVGRCKAMRVLKVNRSISLE
QLQRLLVNAPQLAELGTGSFSQELTFRQYEELESTLGSCKNIHALSGLWEAKGLYLPALY
SLCTHLTFLNLSYAPLQSGELAKLLTHCPQLRRLWVLDTVEDKGLEAVGLNCPLLEELRV
FPADPFDEDIIHGVTEAGFVAVSHGCPRLHYVLYFCRQMTNAAVATIVQNCPDFTHFRLC
IMDPGQPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGSYAKNLETLSVAF
AGSSDWGMQCVLRGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSACNVTMNACRL
LAKEMPRLNVEVMKEDGSDGIQADKVYVYRSIAGPRRDAPPSVLTL
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgtgcgagctgaagaggttcaaggactcgccgaactcggacgagtcggctcgg
cgatcctcatttcccgacgaagtgctcgagcgcgttctatctcttttgaaatctcacagg
gacaggagctccgtttctttggtttgcaaggactggtacaacgcggaacggtggtcgagg
gctcacgttttcatcggaaactgttactccgtctcgccggagatcgtcgcacggcggttc
ccgaaaatccgaagcgtgacgttgaaagggaagcctaggttttccgacttcaacttggtg
ccgcagaactggggggccgatatccacgcgtggctggtcgttttcgcggctaaatatcca
ttcctcgaagagcttaggcttaagcgaatgacaatcagcgatgaaagcttggagttttta
gcggtttctttccccaactttaaagctctctcgcttttgagctgcgatggttttagcact
aacggactcgctgccattgccactcactgcaagaacttgactgagctcgacatacaggag
aacggcattgatgataaaggaggtagttggttgagctgcttccctgaaagcttcacatca
ttggaagcactgaactttgccaacttgaccagtgatattaatttcgatgctcttgagagg
cttgtaggtaggtgcaaggcaatgagggttttaaaggtcaacaggagcatatccttggaa
caattacaaagacttcttgttaatgctcctcaattggccgagcttggtacgggctcattc
tcacaagaacttactttccgccaatatgaagagcttgaaagcacgttaggtagttgcaag
aatatacatgcactatcgggtttgtgggaggccaagggcttatatctccctgctttatat
tctctgtgcacacatctgactttcttgaacttgagctatgctcctttgcaaagtggtgaa
ctcgctaagcttcttactcactgtccacaactacgacgcctttgggtcttagacacagta
gaagacaaaggactggaggccgttggattgaactgcccgttgcttgaggaacttcgagtt
ttccctgctgatccctttgatgaggatattatccatggagtcactgaagctgggtttgtt
gctgtgtctcatggttgcccaagactccactatgtcctctatttttgtcggcagatgact
aatgcagctgtagcaaccattgtacagaactgccctgattttacgcattttcgtttatgc
ataatggacccaggtcaaccagattatctcacaaatgaacctatggatgaagcttttggt
gcagtggttaagacatgcagtaaactccagaggctttcagtttcaggtctcttaactgat
ctgacatttgagtatattggtagctatgctaagaacttggagaccctttcagtggctttt
gcaggcagcagtgactgggggatgcagtgtgttttgagaggttgtccaaaactaaggaaa
cttgagataagagactgcccatttggaaatgcggcactgctttcaggtttggagaagtat
gagtccatgaggtcactttggatgtcagcctgcaatgtgacaatgaatgcttgtaggcta
ttggcgaaggagatgcccagattgaatgttgaggtaatgaaggaggatggaagtgatggt
attcaagcagataaagtatatgtttatcgttctattgcaggcccaaggagggatgcgcca
ccatctgtgcttactctctga
DBGET
integrated database retrieval system
