Theobroma cacao (cacao): 18597265
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Entry
18597265 CDS
T02994
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18597265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18597265
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
18597265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR
Zn_ribbon_LapB
Motif
Other DBs
NCBI-GeneID:
18597265
NCBI-ProteinID:
XP_007026249
UniProt:
A0A061GH18
A0AB32V278
LinkDB
All DBs
Position
6:complement(25769955..25775087)
Genome browser
AA seq
496 aa
AA seq
DB search
MSFDLMLKSSCSGCGSTVDLYGSNCKHMTLCVTCGKTMAENQGKCFECGAIVTRLIREKY
KNKPWMLEDETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTL
EEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKFDDKDNSVAGGKGRKKPTGDDDE
GHVSDRGEEDEEEEAARKNRLGLDKKGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFT
DDDEAVGNEPEERDLAPEVPAPPEIKEDEDEEDEEQEGGLSKSGKELKKLLGKAGGLNDS
DADDDDDDDDDDDMSFNPAPASKQKDAPKEEPADNSPMKPASSASARGTSTASKSAKGKR
KANGDDTKASNGTPLKKVKSETDSKSSVKEESASASKGSVPPKGTPSSAKAGSTSSAVTS
SSAKAGSASTAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFADILRRISK
IQKTNGPNNYVVLRDK
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgatctgatgttgaagtcgtcatgtagcggatgcgggtcgaccgtcgatctg
tacggaagcaactgcaagcacatgaccttgtgcgtgacgtgtggcaaaaccatggcagag
aaccaaggcaaatgcttcgaatgtggcgccattgttacccgcttgattcgtgaaaaatat
aagaacaaaccttggatgttggaggacgaaacaggccaggctcagtatcagggccatctg
gaaggttcacagtcagcaacttattacttgcttatgatgcaaggaaaggaatttgtagct
attccggctggttcttggtacaatttcaacaaggttgcacaatataaacaacttacattg
gaagaagcagaagaaaaaatgaagaacaggaggaagactgcagatggatatgagagatgg
atgatgaaagctgcaaacaatggagctgctgcatttggcgaagtggagaagtttgatgac
aaggataacagtgtggctggtggtaaggggcgtaaaaaaccaactggtgatgatgatgaa
ggtcatgtatcagatagaggagaggaagatgaagaagaggaggcagctagaaagaatagg
cttggactcgacaaaaaaggtggtgatgatgatgaagaaggtccaaggggaggtgatctt
gatatggatgatgatgatattgagaagggtgatgattgggagcatgaagaaatattcact
gatgatgatgaagctgttggtaatgaacctgaggaaagggatctggccccagaagttcct
gctcctccggaaattaaggaggacgaagatgaggaggatgaagagcaggaaggaggactg
agtaagtctggaaaagagttgaagaagttactagggaaagctggtgggcttaatgattca
gatgcagatgatgatgatgacgatgacgatgacgatgatatgagctttaatcctgctcca
gcctctaaacagaaggatgcacctaaagaagaacctgctgataacagtccaatgaaacca
gcatcttcagcttctgctcggggaacttcaactgcatctaagtcagcaaagggaaagaga
aaagcaaatggtgatgatacaaaagcatctaatggtacccctctgaagaaggttaaatca
gaaactgattcaaaatcttctgtgaaagaggaaagcgcatctgcttccaaaggcagtgtg
cctcccaaaggcacaccatcatctgcaaaagctggatcaacatcatcggctgttacatca
tcatctgcaaaagcaggatcagcatcaactgctggacctgtaactgaagaagaaattagg
gccgttttattgcaaaaggcacctgtaacgacctcagatcttgttgctaaatttaaagct
aggctaaaatctccggaggacaagaaggctttcgcagatattcttaggcgaatttctaag
atacaaaagacgaatggacctaataactacgtcgtcttgagagataagtaa
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