Theobroma cacao (cacao): 18597369
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Entry
18597369 CDS
T02994
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18597369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18597369
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18597369
mRNA degradation factors
5'-3' decay
Decapping complex
18597369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Beta-prop_EML_2
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
18597369
NCBI-ProteinID:
XP_007026422
UniProt:
A0AB32V2E8
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All DBs
Position
6:26210625..26219594
Genome browser
AA seq
1420 aa
AA seq
DB search
MASTGNPNQQPQVGGGGGGFDMTKLFKPSSGPLLQQQQQQLHQNLNVIATPPSPSPSPST
TNLTTSPSFPAQSSTPPPPPYLTPSSSYPPPTGPYAFHHPHYLPYPSPPQHQHPLHPHHH
QPQLNINRPFPYQAQPQPSPPATPTSGNDLLMAFFGTPAQTQSQTPAPLPSAPPLTSNVT
PSAPSASPSPSPSPVRLLSSKAPKGRHLFGTNLLYDIHVRLPGEVQPQLEVTPITKYASD
PGLVLGRQIAVNRNYICYGLKLGNIRILNINTALRSLLRGHTQRVTDMAFFAEDVHLLAS
ASVDGRVFVWKINEGPDDDDKPQIFGKVVIAIQIVGQEESIHPRVCWHPHKQEILMVAIG
NRILKIDTMKVGKLEGFSAEEPLNCSVDKLIDGVQFVGKHDGEITELSMCQWLSTRLASA
SVDGMVKIWEDRKASPLAVLRPHDGHPVNSATFLTAPHRPDHIVLITGGPLNRELKIWAS
ASEEGWLLPNDTESWQCTQTLELRSSVESKVEDAFFNQVVALPRAGLFLLANAKKNAIYA
VHIDYGPNPAETRMDYIAEFTVTMPILSLTGTSDSLPGGEHTVQVYCVQTQAIQQYALDL
SQCLPPPLENADLEKTDSNVSRVLDVSNSDVSASLESSHGYKPTDMTLSSSIPMSPLHSS
SPDSATMASRPQKLASSEVTSISESSVSGIESKPSALPSHSSAENMHTASPPLPVSPRLS
QKSSGFRSPSSADHIGNHSAHDHSVDHRVDVVKENKVDIPSSGDNLRKGENETAQNDISM
ISDPSVVFKHPTHLVTPSEILSTVASSAENAQISQDISAGEATVQDVVANNDAESMEVEV
KVVGETGFGQTNETDHPRDSHSTVADKKEKAFYSQASDLGIQMARDFCAETYDVEGAQQA
NDVGVAGQAVRPTNARDGEDQNGTKDVPPKVGESDTAITVSPSLASAKGKKQKGKNSQVS
GPSSPSASPYNSTDSSNEPGCSSGALLADAAFPQLLAMQDVLEQLVSMQREMQKQMNAIV
SAPVNKEGKRLEVSLGRSIEKVVKANTDALWARFQDENAKHEKLERDRTQQISNLITNCI
NKDLPAMFEKSLKKEISAVGPVVARAITPTLEKSISSAITESFQKGVGERAVNQLEKSVS
SKLEATVARQIQAQFQTSGKQALQDALRSSLESSIIPAFEMSCKSMFEQIDVTFQKGLIK
HTTAAQQQFENSHSSLAVALRDAINSATSITQTLSGELADGQRKLLAIAAAGANSKAGNT
LVTQLSNGPLAHLHEMQPEAHVDPTKELSRLIAERKYDEAFTAALHRSDVSIVSWLCSQV
DLQGILSMKQCPLSQGVLLALFQQLACDINKETSRKLAWMTDVAVAINPSDPMIAVHVLP
IFRQVSQIVEHLQSLPSTSASESASIRVLMFVINSVLSCK
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atggcttccactgggaatcccaatcaacaaccacaagttggaggcggtggcggagggttc
gatatgaccaaactgtttaagccctcttccggccctcttctgcagcagcagcagcagcag
cttcatcaaaacttgaacgtaatagcaactcctccaagtccaagtccaagtcctagcacc
accaatctgaccacatccccatcgttcccagcccaatcctccacgcctcctcctcctccc
tatctgacgccttcctcgtcgtatcctcctcccactgggccctacgctttccaccaccct
cactaccttccctacccgtctcctcctcaacaccaacaccccttgcatcctcatcaccat
cagccacagctcaatatcaatagaccctttccttatcaagcccaacctcaaccctcccca
cccgccactcctacctccggaaatgaccttttgatggccttttttggcacacccgctcaa
actcaatcgcaaactcctgctcctctcccttctgccccacctcttacttcgaatgtcacc
ccatctgccccgtctgcctctccctctccctctccctctcccgtccgactgttgagcagc
aaggcccccaagggcaggcatctctttggcaccaatctcctttatgatattcatgtcagg
ctgcccggtgaagtccagccccaactcgaggtcactcccattaccaagtatgcttctgat
cctggccttgttcttggtcgtcagattgctgttaataggaattatatttgctatggtctc
aagcttgggaacatacgtatcctcaacatcaatactgccctccgatccttgcttcgtggc
cacactcagagagtaacagatatggctttctttgctgaggatgtccaccttctggccagt
gcaagtgttgatggccgggtttttgtatggaagatcaatgaaggccctgatgatgacgat
aagccacaaatttttggcaaagttgttattgccattcagattgtcggacaagaagagtca
atccatccacgagtctgctggcatcctcacaaacaagagattttgatggttgctattgga
aatcgtatcctgaaaattgataccatgaaagttggaaaacttgaagggttttcagcagag
gaacctcttaattgctctgttgataagcttattgatggggttcagtttgtcggtaaacat
gatggtgaaattactgagttgtcaatgtgccaatggttgagcacccgattagcttcagct
tcagtagatggcatggttaaaatttgggaagatcgtaaggcctcaccacttgcagtattg
agaccacatgatggtcatcctgttaactcagcgacattcttgactgccccacatcgccct
gatcacattgttcttatcacagggggcccactaaaccgtgaattgaagatatgggcctct
gcaagtgaggagggttggttgttgcccaatgatactgaatcatggcagtgtacccagacg
ttagaattgaggagttctgtggagtccaaggttgaggatgcattctttaatcaagttgtg
gcactgccccgtgcaggcttgtttcttcttgcaaatgccaaaaagaatgctatatatgct
gtacatatagactatgggcctaaccctgcagaaacccgcatggattacatagctgagttc
actgtcacaatgcctatactgagcctcactggaacaagtgatagtttgccaggtggagaa
catactgtgcaagtttactgcgttcaaacacaggctattcagcaatatgctctggacttg
tctcaatgcctgccaccacccctggaaaatgcagacttggagaaaacagattccaatgtc
tctcgtgttctcgatgtctcaaactctgatgtttctgcctctctggaatcatctcatgga
tataaaccaactgacatgactctaagctcttcaattccaatgtcccctctgcactccagc
agccctgatagtgctaccatggcaagccgtccacaaaaattggcttcttcagaggttact
tccatatctgagagcagtgtgtcaggcatagaaagtaagccaagtgctttgccatctcat
agtagcgctgaaaatatgcatactgcatcacctccgcttccagtaagtccaaggttatca
caaaagtcatctggttttagaagtccatcaagtgctgatcacattggtaaccactcagca
cacgatcattctgttgaccacagagtagatgttgtaaaagagaataaggttgatatcccc
tcctcaggtgacaacttgaggaaaggtgaaaatgagactgctcaaaatgacatttcaatg
attagtgatccttctgtggtattcaaacatccaacccatcttgtaacgccatcagagata
ttatctactgtggcttcatcagcggagaatgctcagattagtcaggatattagtgcaggt
gaggcaacggtccaagatgtagttgccaacaatgatgctgaaagcatggaagtagaagtt
aaagttgttggtgagacaggatttggtcaaactaatgaaactgatcatccacgagactct
cattctactgttgccgataaaaaagaaaaggccttctactctcaggcatcagatcttggc
attcagatggccagagatttttgtgcagaaacttatgatgttgagggagctcaacaagct
aatgatgttggtgttgcaggacaagcggtcagacctactaatgcccgtgatggggaagac
cagaatgggacaaaagatgtccctccaaaagttggtgaatcagacactgccatcactgtt
tccccatcactagcttctgctaaagggaaaaagcagaaggggaaaaattctcaagtatct
ggcccatcttccccttcagcaagtccatataattctacagattcatctaatgaaccaggt
tgcagctccggggctctgttagctgatgctgcttttccccaattgctggccatgcaggat
gtgcttgagcagttagtgagcatgcaaagggaaatgcagaagcagatgaatgcaattgtc
tctgctccagttaacaaagaagggaaaagactggaggtatccttgggcaggagcattgag
aaggttgttaaggccaacacggatgctttgtgggctcgtttccaagatgaaaatgcaaaa
catgagaagttagagagagaccgcacacagcagatttcaaatttgatcaccaactgtata
aataaggacttaccagccatgtttgagaaatccttaaaaaaggaaatatctgcagttggc
cctgttgtagctcgtgctattactcccacactggagaaaagtatatcttctgctattaca
gagtcattccagaaaggagtaggagagagggcagtgaatcaactggagaagtcagttagt
tcaaaacttgaagctacagtggccaggcaaatccaagcacaatttcaaacttctggaaag
caggcacttcaggatgcattgaggtctagcttggaatcctccattattcccgcatttgag
atgtcatgcaaatctatgttcgagcaaattgatgtcacatttcagaaagggctaataaaa
catacaactgctgctcagcagcagtttgagaattcccattcttcccttgctgttgctcta
cgggatgctattaattcagcaacttcaatcacacagaccttgagtggagaattggctgat
gggcaacggaaacttctagctattgcagctgcaggtgccaactccaaggcgggaaatacc
ttggtgacacagttgagtaatggtccattggctcatctgcatgagatgcagcctgaggca
catgtggatccaacaaaagaactctcaagactgatagctgagcggaaatatgatgaagcc
ttcactgcagccctgcacagaagtgatgtctcaatagtttcgtggttgtgttctcaggtt
gatctacaagggattttgtcaatgaaacaatgcccgctgagccaaggagttttgctggct
cttttccagcaactggcttgtgatatcaataaggaaacgtctagaaagctagcatggatg
actgatgtagctgttgccataaacccttcagatccaatgattgccgtgcatgtgctaccc
atctttaggcaggtctctcagatagtggaacatctacaaagcttgcccagtacatctgca
tcagaatctgccagcatccgtgttcttatgtttgtcataaacagtgtgctgagctgtaaa
tga
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