Theobroma cacao (cacao): 18597540 Help Entry 18597540          CDS       T02994                                  Name (RefSeq) uncharacterized LOC18597540   KO K06100   symplekin Organism tcc  Theobroma cacao (cacao) Pathway tcc03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:tcc00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     18597540  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tcc03021]     18597540    03019 Messenger RNA biogenesis [BR:tcc03019]     18597540 Transcription machinery [BR:tcc03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      18597540 Messenger RNA biogenesis [BR:tcc03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      18597540     U7-dependent histone pre-mRNA processing factors      18597540 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N HEAT_2 HEAT_EZ Motif Other DBs NCBI-GeneID:  18597540 NCBI-ProteinID:  XP_007026695 UniProt:  A0AB32V1F5 LinkDB All DBs Position 5:complement(731626..742172) Genome browser AA seq 1336 aa AA seqDB search MVGIMNPVSREKLASLFNSVKLAVDLASKLDLSHQLKQTLLEEDAAALSEFLPRVFDLYS DPSGPVRKLATEIIGEIGVKNLDFVPEIAPFLITVLEDATPAVARQSIACSIDLFRLTLE KIAIQGLYSSELDSDLEASWSWMLKLKEKIYSIAFQPGSGGIRLVALKFVEAVILLYTPD PTGSPEAPPDEGTPVEFNATWLCGGHPLLNVGDLSIEASQQLGLLLDQLRFPIVKSLTNS VIVVLINSLSGIAKKRPAYYGRILSVLLGLDSPSVVIKGVHVYGAHHALKNALLSCLKCT HPSAAPWRDRVLGALREMKAGGLAEPALNQVLKTNGSVEEGKDDSSVIKEEKPLVRARDA AGSNMGRKRSVTEDSSDLAENDDVPGKRVRSTPSVSEESTKELNRNTTTSQGDICSTQPT INKGAVDTGPVQQLVAMFGALVAQGEKAVGSLGILISSISADLLAEVVMANMRNLPPDHP HTDGDDELLENMSIVGSDTQAKYPPSFLADVVSLSSTFPPIASLLNSQLSVSNKIVKTEG EEEVDVVAGPNNAVAYAGMAHEAEHALLATDLPVSSDIVLPGKEKIDLPPPSDIHDVGYL ESEIPGLDSSVRTDGLSDTQAASSLVSTDLEDASQEQVTSFGGRSPLHVLPSISTDRSEE LSPKAAVMDSNSLISSTATSVVSSYIALPKMSAPVVNLSDDQKDDLQKLAFIRIIEAYKQ IALSGSLQVCFSLLAYLGVELLSELDLQKLLREHVLSDYINHQGHELTLRVLYRLFGEAE EESDFFSCTTAASAYETFLLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLECLCS PGISEKAENESQSGDRVTQGLSTVWSLILLRPPIRDVCLKIALKSAVHHLEEVRMKAIRL VANKLYPLSSIAQQIEDFAREMLLSVVNGDGIERTDAEGSITEPHKESDSEKPSNEHQSM SSIGKDISADVHQSETSQSVSSLSVPEAQQSMSLYFALCTKKHSLFRQIFVIYKSASKAV KQAIHRHIPILVRTMGSSSDLLEIISDPPSGSESLLMQVLHTLTDGTVPSAELMFTIKKL FDSKLKDVEILIPVLPFLPRDEVLLLFPHLVNLPLDKFQAAVTRLLQGSSHSAPALSPAE VLIAIHGIDPERDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTV LQAIGAFPALVDFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFSVLLQLPPPQLE NALNRTAALKAPLVAHASQQNIRTSLPRSILAVLGLSLDSQNSSQAQTSQAHTGDTSNSD KDAVAVEKSKESSSAS NT seq 4011 nt NT seq  +upstreamnt  +downstreamnt atggtggggatcatgaatccagtttcgagagaaaagctcgcgagtttgttcaactcagtg aagctagctgtagacttagcttcgaagctggatctttctcatcaattgaagcaaactttg ttggaggaagacgccgctgccctctccgagttccttcctcgcgtcttcgacctttactct gacccgtccggtccggttcgcaagctcgccaccgagattattggtgaaattggagtgaaa aacctcgattttgtacctgaaattgcaccgtttctgataactgttttggaagatgctaca cctgctgttgctcgacaatctattgcttgcagcattgatttgtttcgtcttacactcgaa aaaattgcaattcagggtctatactctagtgaattggacagtgatcttgaagcatcatgg tcatggatgttaaagctaaaggagaagatatactctatagcttttcagccaggaagtggt gggataagattggtggcactgaagtttgttgaagcagttattctgctttatactccagat cctactggctctccagaggcccctcctgatgaaggaactcctgtagaatttaatgcaact tggctttgtgggggccatcctttactcaatgttggggatttgtcgattgaagctagccaa cagttgggtttgttgcttgatcagcttagatttccaatagtaaaatctctcaccaactcg gtgattgttgtgcttattaacagtctttcaggtattgcaaagaaacggcctgcatattat ggacgtattctatcagttttgcttggtttggattccccaagtgttgttatcaaaggggtt catgtctatggagcacatcatgctttaaaaaatgccttactctcctgcttgaaatgtaca cacccaagtgctgcgccgtggagggatcgtgtacttggtgccttgagagagatgaaagct ggaggactagcagagccagctctaaaccaagttcttaaaactaatggaagtgtggaagag ggaaaagatgattcttcggttattaaggaagaaaaacccttggttagagcacgtgatgct gctggtagcaatatggggaggaaaagatctgtaactgaggacagtagtgatttggctgaa aatgatgatgtgcctggcaaacgtgtcaggtcaacacctagtgtctcagaagagtcaaca aaagagttaaacaggaatactactacgtctcagggtgacatttgttcaactcaaccaacc attaataaaggagctgttgatactggaccggtccagcaacttgttgccatgtttggtgcc ttggttgctcaaggagaaaaagctgtgggatctttggggattcttatttcaagcatatct gctgacttgctggctgaggtagtgatggctaacatgcgtaaccttcctcccgatcatcct cacactgatggggatgatgaattgctggagaacatgagcatagttggaagtgacactcaa gccaagtatccaccatcattcttagctgatgttgtttcgttgtcgagtactttcccccca atagcctcactgctaaactcccagctgtctgtttccaataaaatagtgaaaacagaaggg gaggaagaagttgatgttgtggctggccctaataatgctgttgcatatgctggcatggct cacgaagccgaacatgctcttttggctactgatttaccagtttcttctgacattgttttg cctggaaaggagaagattgatctacctcctccatctgatatccatgatgtggggtatctt gaaagtgagatacctggcttggattcttctgttcgtactgatggattgtcagacacccaa gctgcttcttcattggtctctactgatctagaagatgctagtcaagagcaagttactagt tttggtggaaggtcaccactgcatgtgcttccatcaatttcaacagataggtctgaggag cttagtccaaaagcagctgttatggattccaacagcctgatttcctcaacagcaacttct gttgtttcgtcttatattgccttgcccaagatgtcagcacctgttgtcaatctttctgat gatcagaaggatgatttgcaaaagttggcttttatacgtatcattgaggcatataagcaa atagctctatctggaagtttgcaagtttgcttttctctgcttgcttatctaggagtcgag ttgctgtccgagttagacctacagaaactgctacgagaacacgttttgtcagattatata aatcaccagggacacgagttgacattgcgtgtcctctacaggttatttggcgaggcagaa gaggaaagcgatttcttctcatgtacaactgctgcttctgcatatgaaacattccttctg gctgttgccgaaactcttagggactcttttccaccttcagacaaatctttaagtaaactt cttggtgaagctcctcgcctgccaaagtcagttttgaatttattagagtgtttgtgttct cctggaatctcagagaaagctgagaatgagtcacaaagcggagatagagttactcaaggc ctcagcactgtatggagcctaattctactgagacctcccattcgtgatgtgtgcttgaaa attgctttgaagagtgcagttcatcacttggaggaagtccgaatgaaagcaatacgtctg gtagcaaataagctttatcctttatcatccattgctcaacaaatagaagattttgcaagg gaaatgctgctctctgtagtaaatggcgatggtatagaaagaacagatgctgaaggatcc attactgaaccacacaaggaatctgattcagaaaagccatcaaatgagcatcagtcaatg agttccattggtaaagacatctctgctgatgttcatcagtcagaaacatctcagagtgtg tcatccctttctgttcctgaggctcaacagagcatgtcactttattttgctctgtgtaca aagaagcactctctctttcgccaaatatttgttatctacaagagtgcatcaaaggcagtt aagcaggcaatccatcgtcatattcccatactagttcgtaccatgggctcgtcatctgac ctccttgaaattatttcagatcctcctagtggaagtgagagtcttcttatgcaggttttg catacactgacagatgggacagttccttctgcagaattaatgttcaccattaagaagtta tttgattcaaaactaaaggatgttgaaattctaattccagtattgccattcctaccaaga gatgaggttttgctgctctttccacatcttgtaaatcttccgctggataagttccaagct gcagttacccggttgctacagggatcttctcattctgctccagcgctctctccagccgaa gtgttaatcgctatccatggtattgatcctgaaagagatggaattcccttaaagaaggtc acggatgcatgtaatgcttgttttgagcaacggcagatattcacccagcaagttcttgcg aaggtcttaaatcaattggttgagcaaattcctcttcctttgttgtttatgcgtacagta ttgcaagccattggtgcttttcctgcactggtggactttataatggagatcctttctcgt cttgtaagcaagcagatatggaagtatccaaagttgtgggtaggatttttgaaatgtgca ttattgacaaagcctcaatctttcagcgtgttgcttcagctacctccaccgcagctggaa aatgcactgaatagaactgcagcactcaaagctcctttggttgctcatgctagccaacag aatatccgaacttcacttccaaggtctatactggcagttttgggactttctctggactct cagaactctagtcaggcacaaacaagtcaggctcacaccggagatactagtaactcagac aaggatgcagtggcagtggagaaatctaaagaatcatctagtgctagctga

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