Theobroma cacao (cacao): 18598158
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Entry
18598158 CDS
T02994
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18598158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18598158
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18598158
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18598158
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
18598158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
18598158
NCBI-ProteinID:
XP_007027620
UniProt:
A0AB32V2I8
LinkDB
All DBs
Position
5:4674344..4681417
Genome browser
AA seq
1125 aa
AA seq
DB search
MLINMENQRRSFDRSRELGLKKPRLTEDLAPNPNGRPFPQRPNPVGAASALRFRSTDSET
GDLSRGGGAYEPQPVPHQQQQQQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLHAA
KAIASTVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPPV
HQSMRHLFGTWKGVFPPQPLQMIEKELGFAPMINGSSSGTTTSRPDPLSQRPPHSIHVNP
KYLEKQRLQQSSRVKGMVNDMTETMSSSKEDSERPDRAAITAGRPYIDPSVKMNNIQRSH
RDMFNEPVREKNIGATFGDYDYGSDLLQTPGMGVGRTGGKVTDQGNDRPWYGATSSVTEM
ISSQRNGFNIKHGSQNYSASKSVNADPRLQATKNIAGRSSSGLSSSWKNSEEEEFMWEMH
SRLSEHDAANISNNSRKDHWTPDVSEKLDFENQLRKAQSVHDVGSRFDRERETTADSLST
EQKDKTSYGRRISSAWPLPESNKTDGLPANNLGHSESYSATIGGLPTGASSSLARIGMRP
QKILANVASGSSSTLGQQRFQALGTASPPEQSPMRQHSPSPSFPGRHPHQQLQKLAEQDY
PQAHSLPRTDPKPSHFSGKLNVGSHKHSSQASSALISSYQPSCHYPFGQPPQPDSVQAEP
SSQTQKPLLSQISKVGAASTLGIASEQANPLAIGTSELSSTSSLLAAVMKSGILSSNSFT
GSLPNKISQDVGQIPSQPPLPNGPPPAVFTSSGLRVDSGTSSGSASHDALAATTNSSQGK
VEQPPLPPGPPPPSLVSNAPAQTSDAESKASNPISNLLSSLVAKGLISASKKDASSLLSH
QIPTQMQESLGMERPTQMQESLGMERHTQMQKESLGMEMPTESPNQSSGISTSSPLPASS
IPSSSDAPSSSTMDEVSFAEPATKSSVALHQSAAMEEENLIGLEFRPDVIREFHSSVISK
LLDDLPHCCSLCGLRLKLQERLDRHLECHAMKKTESEGSNRALRGWYARSDDWIGGKPGQ
FAFESTGSVNQLEKTTAKSELMVPADENQYACMLCGELFEDYFCQIRGEWMFKGAVYLTI
PSKDGEVGTTDGSAGNGPIVHANCISESSVHDLGLAGGVKLENEE
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaatatggagaatcagcgtagatcatttgatagatcaagagaactcggttta
aaaaaaccgcggttaaccgaagacctcgctccaaaccctaacggtcggccctttccccaa
cggccgaacccagttggtgccgcctctgctttaagattccggtccactgattccgagacc
ggtgatttgagccgcggcggcggagcttacgagccacaaccagtgccacatcagcaacaa
cagcagcagcaccaagagttagttagccagtacaagacggcgttagctgagctgactttt
aactcaaaaccgattataactaacttgacgataatcgctggtgagaatcttcacgccgcc
aaggcgattgcttctactgtctgcgccaacattcttgaggttcccagtgaccaaaagctg
ccatcactttatcttttagacagtattgtaaagaatattgggagagattacattaaatat
ttcgctgccaggttacctgaggtgttctgcaaagcatatagacaagttgatcctcctgtg
catcagagtatgcgtcatctttttggaacatggaaaggggtattcccccctcagcctctc
caaatgattgaaaaggaacttggatttgctcctatgataaatggttcatcttcaggaacc
acaacatctagacctgatccactgtcacagcgtccaccacatagcattcatgtaaatccg
aagtatctagagaaacagcgtcttcaacagtcaagcagggtaaaaggtatggtcaatgat
atgactgagacaatgtccagttcaaaggaggattctgagaggccagatagagcagccatt
acagctgggcggccatatatagatccttctgttaaaatgaataacattcagcgttctcat
agagacatgtttaacgagcctgttcgtgagaagaacattggtgctacatttggtgattat
gactatggctctgatcttttacagactcctggcatgggagttggaagaactggtgggaag
gttactgatcaagggaatgataggccttggtatggagctacaagcagtgttactgagatg
atttccagccaaaggaatggttttaatattaagcatggatctcaaaattactcagcatcc
aaatctgtgaatgctgatcctcgtttacaggcaactaagaacattgctggtagaagcagt
agtggattgtctagcagctggaaaaactctgaggaagaagagtttatgtgggagatgcac
tctagattgtcagaacatgatgcagccaatatctctaataactcgaggaaagatcactgg
actcctgatgtttcagaaaagttggattttgaaaatcagctccgcaaagcacaaagtgtt
catgatgtggggtcaaggtttgatagagaaagagaaactactgctgattcattatccact
gagcagaaggacaaaacttcttatgggcgcaggatttcatctgcatggccattgccagag
tcaaataaaacagatggattgcccgctaataatttgggccattctgagagctattctgcc
actattggtgggttgcctacaggtgcaagttcttccctggccaggataggaatgcgacca
caaaagattttggcaaatgtagcatcaggatcctctagtactttaggacagcagcgtttt
caggccctgggaactgcatcaccacctgaacagtctcctatgcgccagcattcaccttca
ccgtcatttcctggacgccatccccatcaacagttacagaaattggctgagcaagactat
ccacaagctcattccctgcctcgtactgatccaaaaccatcccatttttctggaaagttg
aatgttgggtctcataaacactcttctcaggcttcatctgctttgatttcttcatatcaa
ccaagctgtcattatccctttggacaaccaccacaaccagactctgtgcaggctgaacct
tctagtcagactcagaagccacttctgtctcagatctccaaagtaggagcagcctcaaca
ctgggaattgcatcagagcaagccaatccacttgctattggaacttcagaactgtcaagt
acaagtagtctcttggctgctgtcatgaagagtggaatcctctccagcaattcatttact
ggcagccttccaaataagatttctcaagatgtggggcaaataccatcgcagcctcctctt
ccaaatgggcctccgcctgctgttttcacatcctctggcctgagggttgattctgggact
tcatcaggttctgcttcccacgatgcattagcagcaactacaaatagttctcagggaaaa
gtagaacagccaccactgcctcctgggccaccaccaccttctcttgttagtaatgccccc
gcacaaacatcagatgcagaaagcaaggcttcaaacccaatatccaaccttttgagctca
ttagttgcaaaaggtttgatatctgcatcaaagaaggatgcttcatctctcttgtctcat
cagataccaactcaaatgcaggagagcctgggaatggagaggcctactcaaatgcaggag
agcttgggaatggagaggcatactcaaatgcagaaggagagcctgggaatggagatgcca
actgaatcaccgaaccagagctcaggcatttctaccagtagccctttgccagcttcttcc
attccaagttcatcggatgctcctagttcctccaccatggatgaggtatcatttgctgaa
cctgctacaaaaagttcagttgccttacatcagtccgctgcaatggaagaagaaaacctt
ataggattagaattcaggccagatgtaatcagagaatttcattcatctgtgatcagtaaa
ttattggatgaccttccacattgttgcagcttatgtggtcttcgacttaaacttcaggaa
cggcttgatagacacttagagtgccatgccatgaaaaagactgaatcagaaggttctaat
agggctttgaggggatggtatgctaggtcagatgattggattggtggaaagccagggcaa
tttgcatttgaatcaactggttctgtgaaccagttggaaaagacgacagcaaagagtgag
cttatggttcctgctgacgaaaatcagtatgcatgcatgttatgtggtgagttatttgaa
gattatttctgccagatcaggggagaatggatgtttaagggagcagtatacttgactatc
ccatcaaaggatggtgaggtaggaactacagatgggagtgcaggcaatggtcctattgtg
catgcaaattgcatatcagaaagttcagttcatgacttgggactggctggtggtgttaaa
ttggaaaatgaagaataa
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