Theobroma cacao (cacao): 18598419
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Entry
18598419 CDS
T02994
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18598419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18598419
03012 Translation factors [BR:
tcc03012
]
18598419
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18598419
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18598419
Translation factors [BR:
tcc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18598419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
nSTAND3
T2SSE
Rad17
AAA_14
ATPase
NPHP3_N
BEX
DUF5128
ABC_tran
Motif
Other DBs
NCBI-GeneID:
18598419
NCBI-ProteinID:
XP_017977486
UniProt:
A0AB32WI41
LinkDB
All DBs
Position
5:complement(9380771..9389577)
Genome browser
AA seq
1037 aa
AA seq
DB search
MSLRLLSAHNSLTLLFSKRLFLLPTPLISSFPPPQISSFAMSHRPNYQGGRRGGGGPNSG
RGGGRRGGGGGGGSGGPGGEQRWWDPVWRAERLRQKAAEMEVLDEGEWWDKINQMKKGEE
QEMIIRRNFSRSDQQILSDMAYQLGLYFHAYNKGKALVVSKVPLPNYRADLDERHGSTQK
EIRMSTETERRVGNLLASSRDARSADDSGVASSRGATKPLPDVKRTDSVSTIGTDSAKEK
FSAELKQKQENLKASDRVKVMRSFREKLPAFKVKAEFLKAVTENQVLVISGGTGCGKTTQ
LSQFILEEEISCLRGADCNIICTQPRRISAISVASRISLERGESLGETVGYQIRLESKRS
AQTRLLFCTAGVLLRQLVQDPDLNGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRL
VLMSATINADLFSKYFGNAPTIHIPWLTFPVAELFLEDVLQQTRYNIKSEFDNFQGNSQR
RRKELDLKQDNLTALFEDVDIDSHYKNYSVSTRHSLEAWSGSQIDLGLVEAAIEYICRHE
GDGAILVFLTGWDDISKLLDKIKVNSFLGDLSKFLVLPLHGSMPTINQREIFDRPPPNKR
KIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGR
VQPGVCYRLYPKLIHDAMLDYQLPEILRTPLQELCLHIKSLQLGTVGSFLAKALQPPDPL
SVQNAIELLKTIGALDDAEELTPLGRHLCTLPLDPNIGKMLLMGAIFQCLNPALTIASAL
AHRDPFVLPIHRKEEADAAKRSFAGDSCSDHIALLKAFGGYKDAKSNGRERAFCWEYYLS
PVTLQMMEDMRNQFIDLLSDIGFVDKSRGASAYNKYSHDSEMVCAILCAGLYPNVVQCKR
RGKRTAFYTKEVGKVDIHPASVNAGVHHFPLPYMVYSEKVKTTSIFIRDSTNISDYALLL
FGGNLIPSKTGEGIEMLGGYLHFSASKSVLDLIQKLRGELGKLLNRKVEEPGFDISVEGK
GVVSAVVELLHSQNVRY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgcgcttgcttagtgctcataatagcctcactctgctcttttccaaacgcctc
tttctcttgcctacgccgctgatctcttcatttcccccacctcagatttcctccttcgcc
atgtctcatcgacctaactaccaaggcggccgtcgaggaggcggcggtcccaactccgga
cgcggagggggacgccgaggaggcggtggtggaggtggaagcggaggacctggcggtgag
cagcgctggtgggaccccgtttggcgtgctgagcgcctccgtcaaaaagcagctgagatg
gaagttcttgatgagggcgagtggtgggataagataaatcaaatgaaaaaaggagaggag
caagagatgataattaggcgaaatttcagccgttcggaccagcaaattctctctgatatg
gcttaccaattaggtctttacttccatgcatataacaaagggaaggctcttgtggttagt
aaagttcctttgccaaattatcgggcagatcttgatgaacgtcatggatccacacagaaa
gagattcgaatgtctacagaaactgagaggcgagttggaaatcttttggctagctcaagg
gacgcacggtctgctgatgattctggtgtagcatccagtaggggagctacaaaaccattg
cctgatgtgaaaagaactgattcagtttctacaattggaacagattctgccaaggaaaaa
ttcagtgctgaactcaagcaaaagcaggaaaatttgaaggcaagtgatagggtgaaggtg
atgcggtctttccgagaaaagctacctgcattcaaagtgaaagctgagtttttgaaagct
gttactgaaaatcaggttctagtgatttcaggaggaacgggctgtggtaaaacaacacag
ctttctcaatttattttagaagaggagatatcatgtctgcgaggtgctgattgtaacata
atatgtactcagccgcgtcgtatatctgccatatcagttgcatctagaatatccttggaa
aggggagagagtcttggtgaaacagttggttatcagattcgcctagaatcaaagcgctct
gctcaaacacgactcttgttttgcacagctggagtgttactcagacagttggttcaggac
cctgatttaaatggtgtgagccatttgctagtggatgaaattcatgaaagaggcatgaat
gaggactttctgttaataattttgcgtgaccttcttcctcggcgtccagacttgcgtctt
gttttgatgagtgctaccatcaatgctgatttgttctccaaatactttggaaatgctcca
actattcacataccgtggttgacttttcctgtggcagagttatttctggaggatgtgctg
cagcaaactcgttataatatcaaatcagagtttgacaactttcagggcaattcacaaaga
agaaggaaagagctggatttgaagcaagataatttaactgcactgtttgaggatgttgac
attgattctcactataagaattacagcgtatctactagacattcacttgaagcatggtca
ggttcacagattgatttgggtctggtggaggctgcaattgaatatatttgccgccatgaa
ggtgatggagcgattcttgtattcctcacaggctgggatgacatttctaagctccttgac
aagattaaagtaaacagctttcttggggatcttagcaagtttctggttcttcctctgcat
ggttcaatgcctaccattaatcagcgtgaaatatttgaccgtcctccccctaacaagcga
aaaattgtcctggcaacaaatattgctgaaagtagcatcaccatagatgatgttgtctat
gttatagactgtggaaaggcgaaggaaacaagttatgatgctcttaacaagctggcatgt
ctgttaccatcgtggatttcaaaggcttcagcacatcagagacggggccgtgctggccgt
gtgcaacctggagtttgctatagactgtacccaaaattaatccatgatgcaatgcttgac
tatcaattacctgaaattctccgaacaccattgcaagagctatgccttcatatcaaaagc
ttgcagcttggaactgtgggatcatttttggcaaaggcacttcagccaccagatcctctt
tctgttcagaatgcaattgagcttcttaaaacaattggagctttggatgatgcagaggag
cttactcctctgggtcgccatctttgcactctacctttggacccaaacataggaaagatg
cttctaatgggggctatttttcaatgcctgaatccagctttgacaattgcatctgctctt
gcacatcgtgacccgtttgtccttccaatacataggaaagaggaagctgatgcggcaaaa
agatcctttgctggtgattcttgcagtgaccacatagcacttcttaaagcttttggggga
tataaagatgcaaaaagtaatggaagagaaagagcattttgttgggaatattatttatcc
ccggtgaccttgcagatgatggaggatatgagaaatcagtttattgatctgttatcagac
ataggctttgtggacaaatcacggggtgctagtgcttacaacaaatacagccatgattcg
gagatggtatgcgcaatcctttgtgctgggctttacccaaatgttgttcaatgcaaaaga
aggggaaagcgtacagcattctacactaaagaagttgggaaagttgatatccatcctgca
tctgttaatgcaggcgttcatcacttccctctgccttacatggtttacagtgaaaaggtc
aaaacaaccagcatttttatccgtgactcaacaaacatatcagattatgctttgcttctg
tttggtggtaatcttattcctagcaaaactggagagggtattgagatgctcggagggtac
cttcatttttctgcatcaaagagtgtattagacttgatacagaaactgcgtggggaactt
ggcaagcttttgaatagaaaggttgaagaaccaggatttgatatttctgtggaaggaaaa
ggagtggtgtctgctgtggttgagttattgcacagtcaaaatgtacggtactaa
DBGET
integrated database retrieval system
