Theobroma cacao (cacao): 18598841
Help
Entry
18598841 CDS
T02994
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase, chloroplastic
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
18598841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18598841
Enzymes [BR:
tcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
18598841
DNA repair and recombination proteins [BR:
tcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
18598841
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
MNM1_beta
DNA_pol_viral_N
Motif
Other DBs
NCBI-GeneID:
18598841
NCBI-ProteinID:
XP_007028606
UniProt:
A0AB32V4H7
LinkDB
All DBs
Position
5:25314500..25321534
Genome browser
AA seq
535 aa
AA seq
DB search
MNQASPLGFKTLINLSSFAAAPRSLGVGRFVPSRGKVMGSKRRSFSTSSSIDDQNIDKKP
KGVIDNNNPISDKPLLKNFKDDPGKIEAMTVQQLRTALRSAGVPAKGSKRDLVSALQCYL
AKEIDGGSSFLADKQDPSNYDESISIRMEAGSIEDQVQDVNTISKVSRVQRSRRTLNQMQ
IKGETVEVDTKIVTIEQKLSVKTGRASGRKPSQTKRKVSSDVDSKGVSAENGVTLTVNQS
EPWTIFAHKKPQKGWIAYNPRIMRPPPPMGNPKFVKVLSWNVNGLRALLKLEGFSALQLA
ERENFDVLCLQETKLQEKDVKSIKQSLIEGYENSFWTCSNSKLGYAGTAIISRIKPLSVR
YGLGKSDHDSEGRVVTAEFDSFYLLSVYVPNSGDGLRRLTYRITEWDPALSNYIKELEKS
KPVILTGDLNCAHEEIDIYNPAGNKRSAGFTIEERQSFGTNFLSRGFVDTFRKQHPGVVG
YTYWGYRHGVRKTNKGWRLDYFLVSEAIADDVHDSYILPDVMGSDHCPIGLILKV
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagcatcgccacttggttttaagactttgatcaatctttcaagctttgcagcg
gctccaaggagtttgggagttggaagatttgtcccttcgagaggcaaagtaatggggtct
aagagaagaagcttttcgacttcatcctccatagatgaccaaaacattgataagaaaccc
aaaggagtaatagacaacaataaccccatttctgataagcctcttctcaagaatttcaag
gatgatccaggaaaaatagaggcaatgacagttcaacaactcagaactgcattgaggagt
gctggtgtccctgccaaaggttccaaacgtgaccttgtatctgctttacagtgctatttg
gccaaggaaatagatggtggaagttcttttttagcagataaacaagatccttccaattat
gatgaaagcatatctataagaatggaggcaggatccatagaggaccaagtccaagatgtt
aacactatttctaaggtttccagggttcagcggagcaggaggacgttaaaccaaatgcaa
attaagggtgaaacagttgaagttgatactaaaattgtcacgatagagcagaagctatct
gttaaaactggtcgtgcttcaggtaggaagccttctcagacaaagaggaaagtatcttca
gatgttgatagcaaaggtgttagtgctgaaaatggagttacccttacagtgaatcaaagc
gaaccatggacgatttttgcccataagaagcctcagaaagggtggatagcatataatcct
agaatcatgagacctccacctcctatggggaatccaaagtttgtcaaggttctgtcttgg
aatgtcaatgggcttagagcattgctgaaattagagggattctctgccctgcaacttgcc
gaaagggaaaactttgatgtattgtgtttgcaggagactaaactgcaggagaaagatgtc
aagtcaatcaaacagtctctcatagaaggatatgagaatagcttctggacatgcagtaat
tcaaaacttggttatgctggtacagcaataatatctcggattaagccgctttcagtcaga
tatggcctaggcaaatcagatcatgatagtgaaggacgggttgtgacagcagaattcgat
tctttttatttgttaagtgtctatgttcctaattctggggatggcttgagaaggctgaca
tacaggattacagaatgggatcctgctcttagcaattacataaaagaactggaaaagtca
aagccggtcattttgacaggggatctaaattgtgcacatgaagagatagacatttataac
cctgctggaaataaaagaagtgctgggtttacaattgaagaaaggcaatcttttggcaca
aacttcttatccagggggtttgtggacacctttagaaagcagcatccaggtgttgtgggc
tatacttactggggttatcggcatggtgtgcgcaaaactaacaaagggtggaggctggac
tatttcctagtttcagaagccatagctgatgatgttcatgactcgtatattctccctgat
gttatgggtagtgatcattgccctattggccttatactcaaggtctag
DBGET
integrated database retrieval system
