Theobroma cacao (cacao): 18598926
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Entry
18598926 CDS
T02994
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18598926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18598926
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
18598926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
18598926
NCBI-ProteinID:
XP_007028731
UniProt:
A0AB32V4Z0
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Position
5:26586574..26591018
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AA seq
302 aa
AA seq
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MGLPNASGDLSTEVEVDAFRRLFPLRFYEKHLSESIRPDARPLGRARDTTIALGAVASAN
GSALAKIGSTTMLAAIKMEVMTPSTETPDEGCVAIDFHMPPICSPIVRPGRPAEAAPVVS
KQLSDTILSSGMISLKELCLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLEIP
VVSLNDDGKIVLLSEEQEGMSEREPVNREKRKLTLCSIPFSLTCILHKNYILADPTAEEE
SIMETLVTIVLDSSSQLVSLYKPGGPVLAYTSAIQDCIAITRQRVKELQKILEEAISVME
VD
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgggattaccaaatgcaagtggggacttgtcaacggaagtggaggtagatgctttcaga
cgcctctttcctcttcgtttctatgagaaacatctttcagaatctatacgccctgatgct
cggccacttggaagagcaagagataccactattgcccttggggctgtggcatctgctaat
ggttcagcacttgcaaagattggctcaactacaatgttggctgctatcaaaatggaggtc
atgaccccctcaacagaaacaccagacgagggttgtgtagctatcgatttccacatgcct
ccaatttgttctccaattgttaggcctggcagaccggctgaggcagcaccagttgtgtca
aagcagttatctgacactattttaagttctggcatgattagtctgaaggaactttgcttg
gttagtggaaaagctgcttggatggcatatttggacatatactgcttggatgctgatggt
gctctttttgacactgcattactctcagcagttgctgctttttctcatttggaaatccca
gtagtttctctcaatgatgatggaaaaatagttcttttgtctgaggaacaagaaggaatg
tcagaaagggagccagtcaatagggagaagagaaaacttactctatgcagcattccattc
tcattgacatgtatacttcacaagaattacattctggcagatccgactgcagaggaagaa
tctattatggaaactctggtaactatagtcttagattcatctagtcaacttgtgtcgctc
tataaaccgggtggaccagttcttgcatatacatcagctatccaggattgcattgccata
acacggcaaagagtgaaggaacttcagaagattctagaggaagccatttctgtaatggag
gttgactaa
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