Theobroma cacao (cacao): 18598965
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Entry
18598965 CDS
T02994
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18598965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18598965
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18598965
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18598965
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
18598965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
Pcf11_C
zf_UBZ
zf-C2H2
DUF6083
zf-C2H2_4
Zf-C2H2_ZNF451_2nd
Zn_ribbon_NrdR
Motif
Other DBs
NCBI-GeneID:
18598965
NCBI-ProteinID:
XP_017976468
UniProt:
A0AB32WEL0
LinkDB
All DBs
Position
5:complement(27110961..27112115)
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AA seq
384 aa
AA seq
DB search
MAPEVLPPPGKRPRIVAPIPDFIPSFTNISRSPNQPIPYFHYQNRGRIPSPSPHSFHPMQ
HQQGQGFMVNNPNPGVNLILPPTMVKPVTVQDFQLQHQKEQGFAVKNPSGGVFSATTVKP
VQVHGLNLRQAPISCLLKPYATMNVVPERSMPIENTPPGPPPVAPVSSQLSFPQLSSAVL
SELLNSVRAQGLAKPNEETPVEDAVPLEFDAHWLKVRHESVIRSLYSDFPRQCQTCGQRF
KTQENHSKHMDWHVRKNREIKKKKVKPSRQWLLTESQWVACAEALTDTDNGDPPVFVRRN
SIVGMENDEELAVRADEDQRVCALCMEAFEDFYSDETEDWMYKEAVYMRAPYGSMSAGKD
RSQQGPIVHAKCLPQTGKILNNIG
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaagttttgcctcctccagggaaacgacccaggattgttgctcctatccct
gatttcattcccagtttcaccaacatctcacgatccccgaaccaacctataccatatttt
cattatcagaatcgcggccgtattccctctccatcgcctcactcgtttcatccaatgcag
catcaacaaggccagggtttcatggtaaacaaccctaacccaggagttaacctaatactt
cctcccacgatggtcaagcctgttacggttcaagatttccagcttcaacatcaaaaagag
cagggttttgctgttaagaaccctagcgggggtgttttttctgcaacaacagtcaagccg
gttcaagttcatggcttgaatctacgtcaagcaccgatttcctgtctgcttaagccctat
gctaccatgaatgtggttcctgaaaggtccatgccaatcgagaatacccctccaggaccg
ccaccagttgctccggtttcgtctcaacttagctttcctcaattgtcgagtgctgtactg
tcggagttgcttaactccgtcagggcacaaggattagccaagcctaacgaagaaacaccc
gtagaggatgccgttcccctggagtttgatgcacattggcttaaggtgcgccatgaatcg
gtgattagatccttgtattctgatttcccccgacaatgtcaaacttgtggacaaaggttc
aagacccaggaaaatcatagcaaacacatggattggcatgtcagaaaaaacagagaaatt
aagaagaaaaaggttaaaccttctcgacaatggctcttgactgagagtcaatgggttgcg
tgtgctgaagccctgactgacactgacaatggagatcctcctgtgttcgtgaggcggaac
tcaattgtggggatggaaaacgatgaagaattggctgttcgggctgacgaagatcagaga
gtatgtgcattgtgcatggaggcttttgaggatttttacagtgatgagactgaagattgg
atgtacaaagaagctgtttacatgagggcaccttatggatcaatgtctgcaggcaaagat
cgatctcagcaaggtcctatagttcatgctaagtgcctgccacagacaggaaaaatttta
aacaacatagggtag
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