Theobroma cacao (cacao): 18599019
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Entry
18599019 CDS
T02994
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
18599019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18599019
Enzymes [BR:
tcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18599019
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
18599019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF2635
Med27
Motif
Other DBs
NCBI-GeneID:
18599019
NCBI-ProteinID:
XP_007028854
UniProt:
A0AB32V4M3
LinkDB
All DBs
Position
5:27703788..27724521
Genome browser
AA seq
1689 aa
AA seq
DB search
MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLED
RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERC
VSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSIVHNSEAVKPKEWTSLQLME
AMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMVDTFSD
DAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARKKKAQVPLEFMKQKNLFS
GPLLPSEVKKITKLLWENEVELCSIISDIQQQGFGKKVGYSMFFLETILVPPIKFRAPTK
GGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMS
QGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTY
PERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISISRKLPSSRGAIA
QPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCS
TYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTK
RDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTG
KQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEK
NSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVF
LQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETELQLEIERTI
RRDGETALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNF
QQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCM
AGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQT
SFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKP
KDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ
EILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGD
ICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKF
MPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMD
YEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPK
SREEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAK
KVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIPALHTTGVDFGAFWKMED
HIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGR
YRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGS
FDLMQKVEI
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaatcacggagggggcgacggattcagtggaggcggtgagattcaatttcatg
acaaccgaagaggttcgtaaacacagctttttgaaagttaccaacgccaatttgcttgac
ctcatggaccgccctatgcctggtggattatacgacgccgttttagggcctcttgaggat
cgaactccttgtaaaagctgtggcctcttgaaattacattgcccgggtcattgtggtcac
attgacttagtgtctccgatttataatcccttgctgttcaattttcttcatacccttctt
cagaggatctgtttcttttgttatcattttagggcagaaaagactgaggttgagagatgt
gtttcgcaattgaaactcattggaaacggtgatattgttggtgccaaaaggttagattca
gactccgcagatgcatcatcatattcagattataatgaagggagtcaagaatcaggttca
atagtacacaattctgaggctgtaaaaccgaaggaatggacttctcttcagcttatggaa
gcaatgtcagttttaaataactttctaaaactgaaatacaacaagtgtaagaactgcgat
gcaaaaaatcctaatatcaccaaacctgttttcggttggttacacatgaatggcatgttg
ggtgctcaaatgagggaaaatgttatcagagggtgcaaaatggtagacacattttctgat
gacgcaggatctggcttagaagatgctgatgatgtgtctagctctggaaatggtgttgat
atagctgaaatggatacttctgaaattggcttcacaggatctgaaggtaatggtgcaaaa
gcccgtaaaaagaaggcgcaagtccctcttgagttcatgaagcagaaaaatttgttttca
ggacctttgttgccatcagaggttaagaaaattacaaaacttctgtgggaaaatgaggtt
gaactttgctcaattatcagtgatatccagcagcaaggatttggaaagaaagtgggttac
tctatgttctttttagagaccattcttgttcctcctattaagttccgtgctccaaccaag
ggaggtgattctgtgatggagcatcctcaaactgttttgctaagtaaggtgttgcaggcc
aatatatcgctaggaaatgcttatacaaacaatttgcagagttcaaaggctgtagttaga
ctgtggatggatctccagcaatctgtaaatttgttgtttgatagcaaaactgcaatgagt
caagggagagatgtgagctcaggaatatgtcaattgctggaaaagaaggaaggcatgttt
cgccagaaaatgatggggaaaagggttaattttgcatgccgatctgttatatctccggat
ccttatttagctgttaatgagattgggattccaccttattttgcattaaggttaacctat
cctgagagagtgactccttggaatgttgtaaagctgagggaagctattataaatggctct
gaatttcatccgggggctacgcactatgttgataagttatccactaaaaggctgccacca
agccaaaaagcacgtatttccatatcaagaaaattaccttcgtcaagaggtgctattgcc
caacctggaaagaatttggactatgaatttgaaggaaaaattgttctccggcacttacaa
gatggggatgttgtgttggtcaaccgacagcctacacttcacaagccaagtataatggcg
catgtagttcgtgtgttgaagggggagaagacaattcgtatgcactatgcaaattgcagt
acgtacaatgctgatttcgatggtgatgaaataaatgtacatttcccacaagatgaaatt
tctcgtgctgaagcatacaacattgttaatgcaaataatcaatatgtcaggccttcgaat
ggtgaaccaatcagagccttaattcaggatcatattgtaagtgctgtacttctcacaaag
agggatactttcttaagtcgtgatgagtttaatcagctattgtatagctcaggtgtttcc
agtttagcccaaaattctttctctggtaaacctggccagaaagttttcgtatcaacttct
gaagaagggatgctgcccattatacctgcaatattgaaaccaaaacccctttggacaggg
aagcaggtcatcagttctgtgctaagtcatattacaaggggtcgcccaccatttacggtg
ggaaaaactgcgaaaatcccacgtgatttttttagaaacagacgaaataaaaataaacaa
agttcaagagaagaaaatcaaccaaagaatgatggccaaaaagccaaggttgctgaaaaa
aactcaaagaaagaaccggatgaagagaagatattgatatacagaaatgacttggtgcgt
ggtgtgattgataaggctcagtttgctgactatggtctagttcatacagttcaggagctc
tatggctcaaacactgcaggcattttgctttcggtgtttagtcgtctctttacagttttc
ttgcagatgcatggcttcacatgtggagtagatgaccttttgataatggaagataaagac
attgaaaggaagaagcaacttgaagattgtgaaaagaaagtcacagaagcacattatgag
ctttttggagtcaaggtgaatagtgaaacagaattgcaattggaaattgagagaactata
cgcagagatggagagactgcactgacagccttggatagaaagatgataagcgtgcttaat
gagaactcaagcaaaggcgttcttactgagctgttgtctgagggtttagtaaaatctatg
ggtgagaactgtatatctcttatgactacatcaggggctaaaggtagcaaggttaacttt
cagcaaatttcatcttttctgggtcaacaagaattagaagggaaacgagtacctcgaatg
gtttctggtaaaacattaccttgtttccatccgtgggattgggcagctagagctggtggt
ttcatcagtgatcgatttcttagtggtcttcggccgcaagaatattatttccactgtatg
gctggacgtgaaggtctagtagatacagcagtcaaaacatctcgcagtggatacctgcag
agatgccttataaagaatctggagtgtttgaagatcagttatgatcatactgttcgtgat
gctgatggctccattgttcaatttatctatggtgaagatggtattgatgtccatcagacc
agttttattgctaaatttgaagcactggcattaaatcaagatatgatgtcagaaaagctt
tgttctcagcttggagagcctgatgactctgacaaaatattgcctgatggtcttaggagc
aaagctgagcagtttatacgtgaggaaataaagaaataccagcaccagaaaataaagcca
aaagacttcttaaatttgttgaagcttaaatttctttcaagtctagcccagcctggagaa
ccggttggggtgcttgctgctcaatctgtgggagaaccttcaacacagatgacgctgaat
actttccatctagcggggcgaggtgaaatgaatgttacacttggtattccacgtttgcaa
gagatcttaatgactgcttcaattgatatcaggactccagtaatgacatgccccttgcat
aagggaaaaacgaaggaggatgccttatgtcttgctaataagatgaagaaaatcacagta
gctgacatattagagagtatggaagtatctgtcgccccatttgctgttgacaatggtgat
atttgtagtatctacaagcttaagatgatgcttggcaaacctgacaagtattttgagaac
agtgatataactgtgaaagactgtgagcacatcttaaaggttgtgtttttgagggagtta
gaggatgccatacagaatcatctggttttgctctccaaaattagtggcataaaaaaattt
atgccggattcacaacgaaatgcttcaaatgagatggatgaagatgtttctgaaggcaga
tcacgtgagaccaagaatgatgatgatgatgatgatgatgatgctgatgatgaggaaaga
gctgaggatcttggtctagatgcacaaaagcaaaaacagcaaactacagatgagatggac
tatgaagatgattcagaagtggagcaaaatgaaggtgcatctttggcggcgttggaaagt
gaaattgatatgtctgaggatgagactggaactatccaaattaatatgattggatcagat
aatggcaaggatgagatatctcaaagttcgccaaacctagagaacagatctaatcctaag
tcaagggaggaaaagactggatcagaacccaaaaggaagaagatgaaagcaaaatttgtt
aggaaggagtctgatagagcaatatttaatgccattagaggattgtgttttgaggtccat
tttaagttgaaaaacgaacctcacattttactggctcagattgctgagaagactgcaaag
aaggtttacatccagagctttggaaagatcgaccaatgtcgagtgactgactgcagtgag
aatcaagtgttttactatggggaagatcccaaaaaaaggaagagtccatctgacaaggaa
aaaataccagcactacacacaactggagtggatttcggtgctttttggaagatggaagat
cacattgatgttaggtatttatattccaatagcattcatgcaatgcttaatacgtatggt
gtggaagctgcaagagaaaccatcattagggagatcagtcatgttttcacatcctacggg
attgctgtcaatatccgccaccttacacttattgctgattttatgacccattctggaagg
tatcgaccaatgagccgactgggtggtatagctgagtcgatatcacctttcagcaaaatg
tcttttgagactgcctctaaattcattgttgaagcagcaaaacatgggctggtggacaat
ttggaaacgccatcatctagaatctgccttggattgccagtgaaaatggggactggatct
tttgatttgatgcagaaagtagagatttga
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integrated database retrieval system
