KEGG   Theobroma cacao (cacao): 18599084
Entry
18599084          CDS       T02994                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18599084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18599084
   03041 Spliceosome [BR:tcc03041]
    18599084
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     18599084
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     18599084
Spliceosome [BR:tcc03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    18599084
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 Cut8
Other DBs
NCBI-GeneID: 18599084
NCBI-ProteinID: XP_007028959
UniProt: A0AB32V4T2
LinkDB
Position
5:complement(28406323..28411040)
AA seq 336 aa
MEDMKKRKMEEMGNNGELSTQEELRSLLDPLAKSQLVDLLSRLGSQYPSIAEEIKSIASS
DPVHRKLFVRGLAWNTTSETLCAAFQMHGEIEEGAVIYDKTSGKSRGYGFITYKHMESAQ
SALRAPSKLIDGRMAVCNLACEGLSGASTTPDLAQRKLYIGGLSPDVTSEILLNFFGRHG
EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAIDDPQKILGGRTIIVKLADTHKGKPVQ
TQLPAAAVVPVALPMAPSYPQPGKAHPTAAPAGYTYPQTIASYPASSYPSPPAVPAPYPT
QPLIPYAPLAAKKDPQGMPPTTPMGMGGYPYYIGKQ
NT seq 1011 nt   +upstreamnt  +downstreamnt
atggaggatatgaagaagagaaagatggaggagatgggaaacaacggagagttatcgact
caagaagagctacgttctttgcttgaccctctcgctaaatctcagctcgtcgatcttctc
tctagactagggtcccaatatccttcgattgctgaagaaattaaaagtattgccagttca
gatcctgtacaccgaaagctttttgttcgtggcttagcctggaataccacttcagaaacc
ttgtgtgctgcctttcaaatgcatggagaaatagaagaaggggctgtaatctatgacaaa
acctctggaaaatctcgtggctatggtttcattacttacaaacacatggagtcagcgcag
agtgcacttagagcacccagcaagcttattgatggccggatggctgtatgtaatctagcc
tgtgaggggttaagtggggcaagtaccacacctgatctagctcaaaggaagctctacatt
gggggcctatcaccagatgtcacgagtgagatacttttgaatttttttggaaggcatggt
gagattgaggaaggatcggttgcatatgacaaagatacaaatgaatcacgtgggtttggt
tttgtcacatacaagacagtggaagctgcaaagaaggccatagatgatccacaaaagatc
cttggggggagaactatcattgtgaagcttgctgatacccacaagggcaaacctgtacaa
acacagttacctgcagcagctgttgttcctgttgccctgcctatggcacctagctaccca
cagcctgggaaagcgcatcccaccgctgcccctgctggctacacgtatcctcaaaccata
gcatcgtatccggcttcttcataccctagtcctccagcggtacctgcaccatacccaacc
caaccgctgattccatacgcaccccttgctgcaaagaaggacccgcaaggaatgccacca
actacgcccatgggaatgggtgggtacccatattatattggcaaacaataa

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