Theobroma cacao (cacao): 18599239
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Entry
18599239 CDS
T02994
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18599239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcc03036
]
18599239
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
18599239
SWR1 complex
18599239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
HDA2-3
Motif
Other DBs
NCBI-GeneID:
18599239
NCBI-ProteinID:
XP_007029182
UniProt:
A0AB32V5I3
LinkDB
All DBs
Position
5:29644186..29661722
Genome browser
AA seq
2043 aa
AA seq
DB search
MASKGPRSKLEHETRARRQKALEAPREPQRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVALRASKGMLDQATRGEKKLKEEEQRLRKVALNISKDVKKFWMKIEKLVLYKHQMELD
EKKKKALDKQLEFLLGQTERYSTMLAENLVDPHRPVQQCPAQHQLNSPGKADMNDFGEPL
ELNADADEDFDVHSEEESEDDEQTIEEDEALITAEERQEELAALNSEIDLPLEELLKRYD
VERVSRESSPEKREDAIESISVKDNNSNGNCFSASSKIDTTNSLDRRSNESNGGLSLDIE
ASPPRNLSESSGELAKEDVPYDFSDEQEDGDFTLAGEEKDDETTLSEEEELAKADSSNPI
DELALLQKESEIPVEELLARYKKDFSGDDVSGDELEYASALSEDLLDLPAHQNVETREEG
SAKDENLETSAGLGVVHPSAEERDGSPDRKPEDGMESEIRIADAAAAARSAQPTGNTFST
TNVRTKFPFLLKHPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACE
KGIWGPHLIVVPTSVMLNWETEFLRWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCIT
TYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLM
ELWSLMHFLMPHIFQSHQEFKDWFSNPISGMIDGQERVNKEVVDRLHNVLRPFILRRLKR
DVEKQLPMKHEHVIYCRLSRRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNH
PDLFEGRPIVSSFDMGGIDIQLSSSICSILSPGPFSTVDLKNLGILFTDLDFSMTSWESD
EVEALATPSNLIEERADQDNLEEIGTFSKHHKSLRGTNIFEEIRNALREERLREAKQRAA
SIAWWNSLRCRKKPVYSTTLCELLSVKHPAFDIHHQKADRRSYLYSSRLAEIVLSPVERF
QAMIHLVESFMFAIPAARAPAPVCWCSKTGTSMFLHPTYVEKCAETLLPLVTPIRPALVR
RQVYFPDKRLIQFDCGKLQQLAVLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYM
RLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQ
AQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPM
ELFSGHRTLSVKSIQKEKNHNSGIEVSVSNDDVEAALKYAEDEADYMALKKVEQEEAVDN
QEFTEEAMGKVEDDEFVNEDDMKADESADQGGLMTASNKDNGLKLNGVGPMEEKALTFAG
REEDVDMLADVKQMAAAAAAAGQAISSLENQLRPIDRYAIRFLELWDPLIDKGTMNSEVR
FEEAEWELDRIEKYKEEMEAEIDDDEEPLVYEKWDADFATEAYRQQVALAQHQLMEELEY
EAKEKEEADDGNFDAMNEMVSEPKPKSKKKKKPKKAKFKSLKKGSLSSEVKPAKEEPKAE
PMSIDDDVNSHEELSYSDIASPSYHVPKKRKKVEIVHDAEEGKSTKKKPKKLKKPPELRP
VYWDPNAVRKRNDDCAEVKPCESLAVEFEQKPASRSKTGGKISITSMPVKRVLMIKPEKL
KKGNIWSRDCVPSPDSWLPQEDAILCAVVHEYGPHWSLVSETLYSMTAGGFYRGRYRHPV
HCCERYRELIQRHILAAPDSSVNEKFSNAGSGKALLKVTEDNIRMLLNFAAGQPDHELLV
QKHFTALLSSVWRVKSRPENRQNVSSSRNGVRLGGRFLSPFLSHTPQGSAKEPAQRMKFT
NLRECSKLLSAALHDASNRQRSDTVSSSDRRGDSPVIAECLEITLEIQESGDSLIPFPPV
INLSIYGSDLVTSRNETTGEDLHLKASNVAAENRSRAAARACVGGGLGWASSAFPANDSK
SRSGSKLPSLGKHKLSVSDTMRSKSKLKKASMEHGDVHNLLPEQVFQPVATIAPNDPYLR
CDLTSVTNDSSWADVVDSDLCCSMDEALSLESEVYEVVPHSYIAGYISGLDDCSMLPDYT
DIG
NT seq
6132 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaagggaccaaggtctaagctcgagcatgagacaagagctaggcgtcaaaag
gctcttgaagcacctagagagccccagcgtcctaaaactcattgggatcatgttttagag
gaaatggtctggttgtcaaaggactttgagtctgagaggaaatggaaattggctcaggcg
aagaaggttgcattaagagccagcaagggcatgttggaccaggccaccaggggagaaaag
aagttgaaggaagaggaacagcggttgcgaaaagttgcacttaatatttctaaggacgtg
aagaaattctggatgaagatagagaaactggtgctttacaagcatcaaatggagcttgat
gagaaaaagaaaaaggcacttgataaacagcttgaatttcttttagggcaaactgagagg
tactcaacaatgttggcagaaaatttagtggacccacacaggcctgtgcaacaatgtcct
gctcagcatcaactaaattctcctggtaaagcagatatgaatgattttggtgaacctctg
gaattgaatgctgatgctgatgaagattttgatgtgcactctgaagaagaatcagaagat
gatgagcaaacaatagaggaagatgaggctcttataactgcagaagaaagacaagaagaa
ttggcagctttgaacagtgaaattgatcttccacttgaggagctccttaaacgttatgat
gtggaaagagttagcagagaaagtagtccagaaaagagggaggatgcgattgagtcaata
tcagtgaaagacaataacagcaatgggaactgtttttctgcttccagtaaaattgacaca
accaactcgcttgatcgtcgttctaatgaaagcaacggtggtttgtcattagacattgag
gcatctccccccagaaatctgtcagaaagctctggggagctagccaaagaagatgttcca
tatgatttcagcgacgaacaggaagatggtgattttacccttgccggagaagagaaggat
gatgagacaaccctgtcggaggaggaggaactcgcaaaagcagattcaagtaatcccata
gatgagcttgcgttactgcaaaaggagagtgaaattcccgtggaagaattgcttgcaagg
tataaaaaggacttcagtggtgatgacgtgtctggggatgaattggagtatgcctcagct
ttgtcagaagacctcttggatttgccagcacatcaaaatgttgaaacaagagaggagggt
agtgctaaggatgaaaatcttgaaaccagtgctggcttgggtgtggtgcatccctctgct
gaagagagggatggaagccctgatagaaaaccagaagatggaatggaaagtgagattaga
attgctgatgctgctgctgctgcaagatcagcacaaccaacaggcaatacattctcaact
actaatgttcgtacaaagtttccttttcttctcaaacacccccttcgtgaatatcagcat
attggcttggactggcttgttacaatgtatgagaaaaggttaaatggaattctagctgat
gaaatggggcttggaaagacaatcatgacaattgctctgcttgcacacctagcttgtgaa
aagggaatatggggtcctcatctcattgtggttccaacaagtgtgatgcttaactgggaa
actgagtttcttagatggtgtcctgccttcaaaattctgacatactttggaagtgctaaa
gagcgcaaatttaagaggcagggctggttgaaaccaaactcatttcatgtatgcataacg
acttacagactggttatacaggattctaaagtcttcaagcggaagaagtggaaatactta
atcttggatgaagctcatctcattaaaaactggaagtcccaaagatggcaaactcttttg
aacttcaattcaaaacggcgtatcttgttgactggtacaccactgcagaatgatcttatg
gaactctggtcactaatgcattttctaatgccccacatttttcagtctcatcaagaattc
aaggattggttcagtaatcctatatcagggatgatagatggacaagaaagagtgaacaaa
gaggttgttgatcgtttgcataatgtcctccgtccatttatactgcggcgattgaaaagg
gatgttgaaaaacagcttccaatgaaacatgagcatgtcatatattgtaggctctcaaga
aggcagcgcaacttgtatgaagactttattgctagctcagagacacaagccactcttgca
agtgccaatttttttgggatgatcagcgttattatgcaacttcgcaaagtttgtaatcat
cctgacttatttgagggacgtccaattgtgagttcttttgatatgggtggtattgatatc
caattgagttcttccatttgttcaattctttcacctggtccattttcaactgtagatctt
aagaatttgggaattttatttactgatcttgattttagcatgacttcttgggagagcgat
gaagtagaagccctggctactccatcaaatttaatagaagaacgtgctgaccaggataat
cttgaggaaattgggaccttttctaaacatcataagagcttgcgtgggacaaatatattt
gaagagattcgaaatgctttaagggaggagaggttaagagaagcaaaacaacgagcagca
tcaattgcatggtggaattctttgagatgccggaaaaaaccagtttactcgacaacatta
tgcgaactgctctcggtgaagcatcctgcatttgatatccaccatcaaaaagctgatcgt
cgatcctacttgtactcctctaggcttgctgagattgtactttcgccagttgaacgcttc
caggcaatgattcatctggttgagtctttcatgtttgcaatcccagctgcacgggcacca
gcaccagtttgttggtgcagcaaaacaggaacttctatgtttttgcacccaacttatgta
gagaaatgtgctgaaactttgttacccctcgtaacacctattagacctgcacttgtcagg
aggcaagtatactttcctgacaagcggctgatacagtttgactgtggtaagttgcagcag
ctggcagttttattacggagattgaagtctgaaggtcatcgagcattaatatttacccaa
atgacaaagatgcttgacatcttggaggctttcataaatttgtatgggtatacctacatg
cgtctggatggatccactcaacctgaggagcggcaaacattaatgcaacgattcaacaca
aatcctaaaatttttcttttcatcttatcaacccgtagtggaggagttggtattaacctt
gttggggcagatacagttatcttttatgatagtgattggaatcctgccatggatcaacaa
gctcaagatcgctgccatcgaattggacagacacgtgaagtgcatatctatcgtctgatc
agtgagagcaccattgaagagaatatcttgaagaaagcaaatcagaagcgtgcccttgat
gatctagttatacaaagtggagggtacaatactgaatttttcaagaagcttgatcctatg
gaattgttctcgggtcatagaactctttctgttaagagtattcagaaggagaaaaatcat
aacagtggcatcgaggtctctgtatctaatgatgatgtagaagctgctttgaaatatgca
gaagatgaagcagattacatggcattgaagaaagttgaacaggaagaggctgtcgacaac
caggagtttacagaggaagccatgggcaaagtggaagatgatgagtttgtaaatgaggat
gatatgaaggctgatgagtcagctgatcagggtggattaatgacagcttcaaataaagat
aatgggctgaaattaaatggggttggtcctatggaagagaaagctctcacttttgctggc
agagaagaggatgtcgatatgctggctgatgtcaagcagatggcagcagctgctgcagca
gcaggacaagctatctcatccttggagaatcaattaagaccaattgatcgatatgcaatc
cgttttctggaattatgggatcccctcatagacaagggaacaatgaattctgaagttaga
tttgaggaggcagaatgggaacttgatcgcattgagaagtacaaggaggaaatggaagct
gagattgatgacgatgaggaacctctagtgtatgagaaatgggatgctgattttgctaca
gaagcatatcgacagcaggttgctttggctcaacatcagttaatggaagaactggaatat
gaagccaaagagaaggaagaggcagatgatgggaattttgatgctatgaatgagatggta
agtgaacctaaaccaaaatctaagaagaagaagaagccaaagaaagccaaatttaaatct
ctgaagaagggatctttaagttctgaagtgaaacctgcaaaagaagagccaaaagcagaa
cctatgtccatcgatgatgatgttaactctcatgaagagctctcttattcagatattgca
tcaccatcttatcatgtgccaaaaaaacgtaagaaggttgagatagtgcatgatgctgaa
gaagggaagagcactaagaagaagcctaaaaaactaaagaaacctcctgagctacgtcct
gtatactgggatccaaatgcagttcgtaagaggaatgatgactgtgcagaggtaaaacca
tgtgagagccttgcggttgagtttgagcagaaacctgctagcaggagtaaaacaggagga
aaaatttccattacttccatgcctgtaaaacgagtcttaatgataaaaccagagaaattg
aagaagggcaatatttggtcaagagattgtgttccatcacctgattcttggttgccacag
gaggatgctatattatgtgcagttgtgcatgaatatggcccacattggagtttggttagt
gaaacactctacagcatgactgctggtggcttttacaggggaagatatcgccatccagtt
cattgttgtgagaggtaccgggaactaattcaacggcatattttggctgcaccagacagt
tcagttaatgaaaaattcagcaatgcaggctctggaaaagctcttctcaaagtaacagag
gataacattcgaatgctgttaaactttgctgctgggcagccagatcatgagttactagtt
caaaagcacttcactgccttactttcatctgtatggagggtgaagtctcgccctgaaaat
cgacaaaatgtctcatcatctcggaatggtgttcgtttagggggaaggttcctcagtcct
tttctgagccacacacctcagggttctgcaaaggaaccagcacagaggatgaaatttaca
aatttgcgggagtgtagcaagttgttatcagctgcactccatgatgccagcaatagacaa
cggagtgacacagtttcctcctctgataggagaggggattctcctgtcattgcggaatgt
ttagagataacactggaaatacaggagagtggtgactctctgattccattcccaccagta
ataaatttatcaatatatggttcagatcttgttacatctagaaacgagaccactggagaa
gacctccatctcaaagcttcaaacgttgcggctgagaaccggtctagggcagcagctagg
gcttgtgttggaggtggtctgggttgggcttcatctgccttcccagcaaatgattccaag
tcacgttcagggtcgaaattgccatctttggggaagcacaagctgtctgtctctgacaca
atgagatctaaatcaaaactgaagaaggcttcaatggagcatggtgatgtacacaactta
ttgccagagcaagtgttccaaccagtggcaacaattgctccgaatgatccctacttaaga
tgtgacctgacatctgtgactaatgacagcagttgggctgatgttgttgatagtgattta
tgttgcagcatggatgaggccctttcactggaatcagaggtttatgaagtggtcccacat
agttatatcgccggatatatttcaggcctcgatgattgttcgatgctcccagactatact
gacattgggtaa
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integrated database retrieval system
