KEGG   Theobroma cacao (cacao): 18599796
Entry
18599796          CDS       T02994                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03030  DNA replication
tcc03410  Base excision repair
tcc03420  Nucleotide excision repair
tcc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    18599796
   03410 Base excision repair
    18599796
   03420 Nucleotide excision repair
    18599796
   03430 Mismatch repair
    18599796
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tcc03032]
    18599796
   03036 Chromosome and associated proteins [BR:tcc03036]
    18599796
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18599796
DNA replication proteins [BR:tcc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    18599796
  DNA Replication Termination Factors
   ELG1-RFC complex
    18599796
Chromosome and associated proteins [BR:tcc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    18599796
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     18599796
  Check point factors
   HRAD17(Rad24)-RFC complex
    18599796
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA Rad17 DNA_pol3_delta Sigma54_activ_2 AAA_22 DUF815 RuvB_N AAA_5 AAA_23 RsgA_GTPase Mg_chelatase ABC_tran AAA_29 AAA_2 AAA_16 AAA_24 T2SSE nSTAND3 TsaE
Other DBs
NCBI-GeneID: 18599796
NCBI-ProteinID: XP_007029981
UniProt: A0A061F0P3
LinkDB
Position
5:34231217..34236000
AA seq 354 aa
MLWVDKYRPKTLDQVMVHQDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG
SSAEKVKVENRNWKIDIGSRTIDLELTTLSSTNHVELSPSDVGFQDRYVVQEIIKEMAKN
RPIDTKGRKGYKVLVLNEVDKLSRQAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
CLNIRVNAPSEEQIIKVLEFVGKKEGLQLPSGFAARIAEKTNRSLRRAILSFETCRVQQY
PFTSSQAIPPMDWEEYISEIATDIMKEQSPKRLFQVRGKVYELLINCIPPEIILKRLLHE
LLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtagataaatacagacccaaaaccctagaccaagttatggttcatcaagac
attgcccaaaatctcaaaaaattggttacagagcaagattgcccacatttactcttctat
gggccatctgggtctggcaagaaaaccctaattatggctcttcttagacagatctttggt
tccagtgctgaaaaggtgaaagtggagaataggaattggaaaattgatattggaagcaga
accattgatctggagttgaccacattatcaagcaccaaccatgtggagttgagtccaagt
gatgtaggctttcaggacagatatgtagttcaagagataattaaagaaatggctaagaat
agaccaattgacaccaaggggagaaaaggatataaagtgttagtactcaatgaagttgac
aagctttcaagacaagcccaacattctcttcgaagaacaatggagaagtatagtgcttct
tgccggctaattttgtgctgtaatagttcttcaaaagtcactgaggccatccgttctcgt
tgtctgaatatccgagtaaatgcaccttcagaagagcagattattaaggtgttggagttt
gttggaaagaaagaagggttgcaacttccatctggttttgcagctcgcattgcagaaaag
acaaatcggagtttaagaagagctatattgtcatttgagacttgccgcgttcaacagtac
cctttcacaagcagccaagcaattccaccaatggattgggaggaatatatatccgaaata
gcaactgacataatgaaggagcagagccctaaaaggctgtttcaggttcgagggaaggta
tatgaattgcttattaattgtatccctccagagataattttgaagaggctccttcatgaa
ttattgaagaaattggatgcagaactaaagcatgagatctgccattgggctgcatattat
gaacataggatgcgtcttggacagaaagccatctttcacattgaagcatttgttgccaag
ttcatgagcatttacaaggctttcttgattgcaaccttcggctga

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