Theobroma cacao (cacao): 18600281
Help
Entry
18600281 CDS
T02994
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18600281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18600281
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18600281
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18600281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
18600281
NCBI-ProteinID:
XP_017977484
UniProt:
A0AB32WHW9
LinkDB
All DBs
Position
5:37338987..37345566
Genome browser
AA seq
890 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLTVKKGKTRPPRLIHLEASITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDNFSEVDDLYHSLPLDKVES
LEDLVTIGPLSKQGAPILNLKTSLATSASQVPGSSSQEHVEDTASQDSNSDVARTPPSKS
SATNSSAAATPTGSHATPAPVNLPPHSMSGASTASVVLPGSSSARGVLESAGTTNPSSPV
NLPNATKEEDITSFPGRRPSPSLADTGVRGIGRGGLSSQPSSSIPLVSGSATSSNGALGV
VPSVSDVAKRNILGADERLGNSSMGQSLVSPLSNRMILPQATKANDGSAPVDSSNPSESA
GLPGRGFSPSMVSGMQWRAGSSFQNQNELGQFRGRTEIAPDIREKFLQRLQQVQQQGHSN
LLSIPPLAGGNHKQFSAQQQNPLMQQFNSQSSALSIQPGMGLGGQAPSLNSVTSASLQQS
PNSIHQQSSQQALATSVPKDADVGHAKVEEQQPQNLPDDSSSEAVPTSGLAKNLMNEDEM
KAPYAIDSPAAVSGSLTEPAQVIRDTDLSPGQPLQTSQSSSSLGVIGRRSVSDLGAIGDN
LSGSTNSGGMHDQIYNLQMLEAAYFKIPQPKDSERPRSYTPKHPAATPASYPQVQAPIVN
NPAFWERLSIDGYGTGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEE
PKIATDEFEQGTYVYFDFHIANDDHQHGWCQRIKTEFTFEYNYLEDELMV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagtcgcaagcttcaaggagagattgatcgtgttctcaagaaggtccaagaa
ggcgtcgatgtcttcgatagcatctggaacaaggtttacgatactgataatgccaatcag
aaggaaaagtttgaggctgacttgaagaaggaaatcaagaagctgcaaaggtatagggac
cagatcaagacatggattcaatcaagcgaaatcaaggacaaaaaagttagtgcctcttat
gagcaggccctggtggatgctcgcaaacaaattgagcgagaaatggaaagatttaagatc
tgtgagaaggagactaagacgaaagcattctctaaagaaggcttgggccaacaacccaaa
actgatccgaaggagaaggctaaatcagaaacaagggattggttgaacaatgtggttggg
gagttagaatcccagattgataattttgaagctgagttggaggggctgaccgtgaagaaa
ggaaagacaagaccacctagactgatacacttggaggcatcaattacacggcacaaagct
catataatgaagttagaattgattttgagattattggacaatgatgaattgagtcctgag
caagtcaatgatgtgaaagacttcttggacgattatgtggaacggaatcaggaggacttc
gataactttagtgaagttgatgatctctaccactcattacctctagacaaggtggagtct
cttgaagatttagttacaattggccctctttccaagcagggtgcaccaattcttaacttg
aagacgtctttggccacatcagcatctcaagtgcctggtagttcctcccaggagcatgtt
gaagatacagcttctcaggatagtaattctgatgtcgcgaggactccaccttcaaaaagt
agtgcaaccaattcatctgctgcagcaacaccaactgggagccatgctacacctgctcca
gtgaatcttccacctcatagtatgtctggtgcttcaactgcttcagttgttcttccaggt
tcaagttctgctcgaggtgtcttggaaagcgctggcactaccaatccttcatctcctgta
aatttgccaaatgctacaaaagaagaagatatcacaagcttccctggccgtaggccatct
ccatctcttgctgatactggagtacgaggcattggtagaggaggcctctccagtcagcct
tcatctagtatcccccttgtttctggaagtgcaacttctagcaatggagctcttggtgtt
gtcccttctgtctctgacgtggcaaaacgaaatattttgggggctgatgagagacttggg
aatagtagcatggggcaatctttggtatcccctcttagtaatagaatgatcttgcctcag
gcaaccaaggctaatgatggcagtgcacctgttgattctagtaaccctagtgagtctgct
ggactacctggcagaggtttttccccttcaatggtttctggtatgcagtggagggctgga
agttcctttcagaatcaaaatgagctggggcagtttcgtggaagaactgagatagcacct
gatataagggagaaatttttgcaacggctccagcaagtgcagcaacaaggccatagcaac
ctacttagcattcctcctcttgctggcggaaaccataagcagttttctgctcaacagcaa
aacccactcatgcagcagttcaattctcaaagctcagctctctctatccaacctggtatg
ggacttggtggccaagcgcccagtcttaatagtgttacatctgccagcttacagcagtca
ccaaattccatacaccagcagtctagtcagcaggcattggcaacaagtgttccaaaggat
gctgatgttggtcatgcaaaagttgaggagcaacaaccacagaatttacctgatgattca
agttctgaagctgttccaacgtctgggcttgctaagaatctcatgaatgaggatgaaatg
aaagctccatatgcaattgattctcctgcagccgtatcaggctctttgacagaaccggct
caagttattagggacactgatctttctcctggacaacccttacaaaccagccagtcttct
agcagtcttggtgttattggccggagaagtgtttctgaccttggtgccattggtgacaac
ctcagtgggtcaacaaattccggaggaatgcatgatcaaatatacaatttgcagatgctt
gaggctgcatattttaaaattccccaacctaaagactcagaacgtccaaggagctacact
ccaaagcaccctgcagccacgcctgctagctaccctcaagttcaggcacctattgtgaat
aatcctgccttctgggaacgcttaagcattgatggatatggcactggcactgatacactg
ttctttgccttttactatcaacagaacacttaccaacaatatctggctgcaaaggagctg
aagaagcaatcttggagataccataggaaatacaacacatggtttcagcggcacgaggag
ccaaaaattgccacggatgaattcgaacagggaacctatgtatacttcgattttcacata
gcaaatgatgaccaccaacatggatggtgtcagagaatcaagactgagttcacctttgag
tataattaccttgaagacgaacttatggtataa
DBGET
integrated database retrieval system
