Theobroma cacao (cacao): 18600784
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Entry
18600784 CDS
T02994
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18600784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18600784
03009 Ribosome biogenesis [BR:
tcc03009
]
18600784
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18600784
Spliceosome [BR:
tcc03041
]
Complex A
U1 snRNP components
U1 related factors
18600784
Complex B
18600784
Ribosome biogenesis [BR:
tcc03009
]
Eukaryotic type
Pre-60S particles
Helicases
18600784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18600784
NCBI-ProteinID:
XP_007031512
UniProt:
A0AB32V5V1
LinkDB
All DBs
Position
4:735496..741434
Genome browser
AA seq
771 aa
AA seq
DB search
MAATATASSAGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPVTNVTQYERPTSIDSVQKF
SAVPISSSVQVQQSSEGRRGYSPDKENDRYGRGSNAVSKLEPVSRSNQNARGGPVHSLNT
PNGTASSLIGGSSTRGHGSAAAGSNMSSDAYRRQHEITVTGDAVPAPFTSFEATGLPSEI
LREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFVHLKRCRNEPQM
GPTVLVLSPTRELATQIQDEALKFGKSSRISCTCLYGGAPKGPQLREIERGVDIVVATPG
RLNDILEMRKISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPREV
RKIAADLLVNPVQVNIGNIDELVANKSITQYVEVLSPMEKHRRLEQILRSQEPGSKIIIF
CSTKKMCDQLARNLSRQFGAAAIHGDKSQADRDYVLSQFRTGRSPVLVATDVAARGLDIK
DIRVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDSKYASDLIKVLEGANQRVP
AELRDMASRGGGMGRPRRWAPSSGGRDGGRGGRTDSGYGGRDSGRGGRGISTSSSSWHER
SGGRGYDHESRDRYDRGFHDSYDKGRSRSRSRSPAGWSDRNKSSGRDRSRSRSLDRHDRA
AGRERSPARSFHEAMMKRSRSSPPQQRGPPFGNENSREHKNFVASRSPPRERSGSPYGGG
NGRDNFGGSYGDSQKDRGRSGYANGFRTGFGDEEEGMIPADEDGIIPPNDH
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcgactgcctcttctgctggaccacgatatgctccgccagaccccact
cttcccaaaccatggaaaggcctagttgatggtaaaactggttatctctacttttggaat
ccagtaaccaatgtcacccaatatgagaggcctacaagcatagattctgtccaaaagttt
tctgctgtgcctataagttcttcagttcaagttcagcaatcttctgaagggcgtcgtggg
tatagtcctgacaaggagaatgataggtatggaagaggcagcaatgctgtatcaaaactt
gagccagtatcaagaagtaaccagaatgcaagaggtggaccagttcattcccttaatacc
cctaatgggactgccagctctttgattggaggatcttctactaggggacatggatcagca
gctgcaggaagtaatatgtctagtgatgcttatcgtcgtcagcatgagataacagtaact
ggagatgcagtgcccgcgccttttacatcatttgaagctactggcttaccttctgagata
cttcgagaggtacataatgctgggttttctgccccgactccaattcaggctcagtcgtgg
ccaattgcattgcaaagtagagacatagtggccattgctaaaacaggatctgggaaaaca
ttgggttacctgattcctggatttgttcatctcaagcgttgccgtaatgaacctcaaatg
ggtccaactgtgctagtattgtcaccaacgagggagttggctactcaaatacaagatgaa
gctctcaagtttgggaagtcatcaagaattagttgcacgtgtttatatggaggagcacca
aagggtcctcagttgagggagattgagagaggagtagatatcgtggttgccactcctggc
cgattaaatgatattctagagatgaggaaaatcagcctccatcaagtttcttaccttgtc
ttagatgaggctgatcgcatgttggacatgggttttgaacctcagatacggaagattgtg
aaagaagtgcctactcgcaggcagactctcatgtacacggcaacatggccaagggaagtc
cggaaaattgcagcagatctactggtaaatcctgttcaggtcaacattggcaatattgat
gagcttgtggcaaacaagtctatcacacagtatgttgaagtattatcaccaatggagaaa
cacagaagattggagcaaatactgcgctcccaggagcccggatccaagattattattttt
tgttcaaccaagaagatgtgtgatcaacttgctcgcaaccttagtcgccagtttggagct
gctgccatccatggagacaaatctcaggctgacagggactatgtgctgagtcaatttcgc
acagggaggtcaccagtgcttgttgctactgatgttgctgctcggggattggacattaaa
gacattagggtggtaatcaactatgacttccctactggagttgaggattatgtgcatagg
attgggaggactggaagggcaggtgcaaccggattggcttacacattctttggtgatcaa
gattcaaagtatgcttcagatctcatcaaagttctagaaggagcaaaccagcgggttcct
gcagaacttcgtgacatggcttcgcgtggtggtgggatgggaaggcctagacgttgggcc
cccagttctggtggccgtgatgggggacgtggcggacgtactgattcagggtacggagga
agggacagtggaaggggtggtcgaggaatatctacatcctcctctagctggcatgagaga
agtggaggacgtggatatgaccatgagtctcgtgacaggtatgatcgtggtttccatgac
agttatgataagggacggagtcggagtcgaagtcgaagtcctgcaggttggagtgatcgc
aataaaagcagtggccgtgaccgcagccggagtcgtagcctggacaggcatgatagagct
gctggacgtgaacgttccccagcgcggagttttcatgaggcaatgatgaaacgtagtcgg
tcatccccaccacaacagcgtgggccaccttttggtaatgagaattcaagggaacacaaa
aattttgtggcttcgcggagccctcctcgtgagaggtcagggtcaccttatggtggtggt
aatggaagggacaactttggaggatcatacggtgattctcagaaggatcggggaagatca
ggatatgctaatgggtttcgtacaggttttggagatgaggaggaaggtatgattccagct
gatgaagatgggataatacctcccaatgatcattga
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