Theobroma cacao (cacao): 18600802
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Entry
18600802 CDS
T02994
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18600802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18600802
03016 Transfer RNA biogenesis [BR:
tcc03016
]
18600802
Enzymes [BR:
tcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
18600802
Messenger RNA biogenesis [BR:
tcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
18600802
Transfer RNA biogenesis [BR:
tcc03016
]
Prokaryotic type
tRNA degradation factors
18600802
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
Urease_gamma
OB_PDCD11
S1_RRP5
KH_PNO1_2nd
Ribosomal_L6
KH-I_KHDC4-BBP
PCB_OB
Motif
Other DBs
NCBI-GeneID:
18600802
NCBI-ProteinID:
XP_017975839
LinkDB
All DBs
Position
4:845690..854670
Genome browser
AA seq
978 aa
AA seq
DB search
MSSLAIKARAKANPLLTWRALRFRTICSGGLGFATSESDPPYPPVAGTKFLESFKEEFEI
GSRVISLETGKIARFANGAVVLGMEETKVLSTIAAGKGDAVRDFLPLTVDYQEKQFAQGV
IPNTFMRREGAPKERELLCGRLIDRPIRPLFPAGFYHEIQVMASVLSSDGKQDPDVMAAN
ATSAALMLSDIPWGGPIGVVRIGRICGQFIVNPTMDELSLSDLNLVYACTRDKTLMIDVQ
AREISEKDLEAGLRLAHPEAVKYLEPQIRLAARAGKQKKEYKLSMVSEQTFEKVRNLAEE
PIEAIFTDPSYGKFERGEALEKIAQDVKNALEEECDEESLKVLPKVVDTVRKEVVRKKII
SEGSRVDGRHLDEVRPIYCEAGHLPILHGSALFNRGDTQVLCTVTLGAPQDAQRLDSLVG
PPTKRFMLHYSFPPFCINEIGKRAGLNRREVGHGTLAEKALLAVLPPEDCFPYTVRINSE
VMASDGSTSMATVCGGSLALMDAGIPLREHVAGVSVGLVTDVDPATGEIRDHRILTDILG
LEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIICDCLEPARKGRLQILDHMEREISA
PRTQDDRNSPRLVTLKFTNDAIRKFIGPLGSVKRKIEEETGARISVGDGTITIVAKNQAV
MEKVQDKVDFIVGREIEVGGIYKGIVTSVKEYGAFVEFNGGQQGLLHISELSHEPVSRVS
DVVSVGQQISLMCIGQDVRGNIKLSRKATLPQPGSKTKIAVEGSAPVSKEAPNVWVSLEN
VSNGEQQTSTVEELPLRKNEDAEANPFASSAPAVVIRSAAECDEEEKSAGLSKTAKSAPK
RMGILKRNNKLKTVQPSNNKPDSTLSSLLSNSLSLMGREKEFISEDEGENNLSNQKDKET
DDKTPMTPQKLKLGTKVTAKVYQIRARGLVLDLGGGIRGMYRFEPNGEKDFNVGDELPVQ
CSSFTSKGIPVMSLVDEE
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcactagctatcaaagctcgagccaaagccaacccactcctaacatggcgagcc
ctccgtttccgcaccatctgcagcggcggtctcggtttcgccacgtctgagtccgaccca
ccttacccaccagtggcagggaccaagtttcttgagtcatttaaagaagagttcgaaatt
ggatccagggtaatttcacttgaaaccggtaaaattgctcgttttgctaatggggctgtc
gttttgggcatggaagagaccaaagttttgtccactattgccgccggtaaaggcgacgct
gttcgagattttttacccctcactgttgattatcaagagaagcaatttgctcaaggtgtc
attccaaatacattcatgcggagggagggtgctccaaaagaacgtgaacttttgtgtggt
cgcctcattgataggcccatacggcctctttttcctgctggtttttaccatgagatccag
gtaatggcaagtgttctttcttctgatggaaaacaagatccagatgtgatggcagctaat
gcgacatctgctgctcttatgttatcagatattccatggggtggacccattggagttgtg
cgaattgggagaatttgtgggcagtttattgttaatccaactatggatgagcttagttta
agtgatctcaacttggtatatgcctgtacaagggacaaaaccttgatgatagatgttcaa
gctcgtgaaatctccgaaaaagatttagaagctggtttaagactggctcatccagaagct
gttaaatatcttgaacctcaaatcagactggctgcgagagctggcaaacaaaagaaggaa
tacaaattgtctatggtctcagaacaaacttttgaaaaagtcagaaacctggcagaagaa
ccaatagaagctatttttactgatccttcctatggcaagtttgaacgtggagaggctcta
gagaagatagcacaagatgtaaaaaacgcacttgaagaagaatgtgatgaagaaagctta
aaagttctgccaaaggttgtagacacggtcaggaaagaggttgttcgcaaaaagattatt
tctgaaggatctagagttgatgggagacatcttgatgaagttaggccaatatactgtgaa
gctggccatttgcctatattgcatggatctgctctttttaaccgtggagatactcaggtt
ctgtgtactgtcacacttggagcacctcaggatgcacaacgcttggactccttggttggt
cccccaacaaagcgcttcatgcttcactatagttttccaccattttgtatcaatgaaatc
ggtaaacgagcaggcctgaacagacgtgaagtagggcatggaactcttgcggagaaagct
cttcttgctgtgttacctcctgaagattgtttcccatataccgttcgcatcaattccgaa
gtcatggcttcagatggttcaacgtcaatggcaactgtttgtggaggcagtttggcgttg
atggatgctggcattccattacgagaacatgttgcaggtgtttcagtgggtcttgttact
gatgttgaccctgcaactggtgaaattagggaccatcgtatattaactgatattttgggt
ctggaagatcatctgggagacatggacttcaagattgctggaacaaggaatggagttaca
gcaattcaattggatataaaacctgctggaattccgttagatataatatgtgactgttta
gagcctgcccgtaaaggtcgccttcaaatccttgatcacatggagcgagagattagtgca
cctcgaactcaagatgatagaaattctcctcgactagttaccctgaagttcaccaatgat
gctattcggaaattcattgggcctctaggttctgttaaaagaaaaattgaagaggaaaca
ggggcacggatctctgtaggcgatggaacaattactatagttgctaagaatcaggctgtg
atggagaaagtgcaagataaggttgatttcatagttggccgtgaaattgaagttggagga
atctataaaggcattgtgacatcagtcaaagaatatggtgcctttgtggagttcaatggt
ggacagcaaggcctgctacacatttctgagttgtcacatgaaccggtgtctcgggtttca
gacgtggtgtctgtcggccagcaaatttctttgatgtgcatagggcaagatgttcgtggt
aatatcaaattatctcgtaaagcaactttacctcagcctggatctaagacaaaaattgca
gttgaaggatctgctcctgttagtaaagaagcacctaacgtttgggtatcacttgagaat
gtgtctaatggagaacagcagacatctactgtagaggagttgcctctgagaaaaaatgag
gatgctgaagcaaatccttttgcctcttcagcaccagctgtagtaattcgaagtgctgct
gagtgtgatgaggaagaaaaatctgctggtttgagtaagactgccaaaagtgcacctaaa
cgaatgggcattttgaaaaggaataataagctgaaaacagtccaaccttccaataacaag
cctgattcaacactcagcagtctgttgtcaaattccttgtctctaatgggaagggagaaa
gaatttattagtgaagatgaaggtgagaataatctgagtaatcagaaggacaaggaaact
gatgataagactcctatgacacctcaaaagctaaagttaggaactaaggttactgccaag
gtttatcaaattcgtgcacgtggtttggttcttgatttgggtggtggaattcgtggcatg
tataggtttgagcccaatggtgagaaggacttcaatgtaggtgatgagttgccagtccaa
tgttcaagttttacatctaaaggtatccctgtcatgtctttggtggatgaggaatga
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