Theobroma cacao (cacao): 18601276
Help
Entry
18601276 CDS
T02994
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18601276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18601276
Spliceosome [BR:
tcc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18601276
Complex C
U4/U6.U5 tri-SnRNP related factors
18601276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
18601276
NCBI-ProteinID:
XP_007032224
UniProt:
A0AB32V917
LinkDB
All DBs
Position
4:6457152..6462983
Genome browser
AA seq
446 aa
AA seq
DB search
MEIQTCGKPINSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYAADPKTLWTWFEPYIK
DEEEFSPGSNGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKMKLPTKPSG
ATGDSNRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRSLPPPPYDRSGSDD
LKRSPSHRRSQSREYSDREYSEKDRDWDRDRERERERDRDRDRDRNRDRGRDRDRNRDRH
RDRNKDRNRDRDWDRERAKDKERDRERTHDYNRRSRYSDKRDYEELRDDNRHYRVASSHR
SRSRTRSRSRSRSRSRSLQAGNSHFDRHSSPPKEGSKEKTSASSNLAKLKDLYGDLSDQK
GDGFERVPRRDNSGEEVIRLGGSTWK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggagatacagacatgtggcaaaccgattaattcattattagaaaaggtgctgtgtatg
aatatactgtcttctgattatttcaaagagctttaccggttaaagacataccatgaagtc
attgatgaaatttacaatcaagttgatcatgttgagccatggatgaccgggaactgtcgt
ggtccttcgactgcattctgccttctttacaagttttttaccatgaagcttactgtcaaa
caaatgcatgggctgttgaagcatcccgattctccttacattagagccattggatttctc
tacttgagatatgctgcagatccaaagactttatggacttggtttgaaccttacatcaaa
gatgaagaggaattctcccctggatccaatggacgaatgactacaatgggtgtatacgtg
cgtgatttgcttcttggacagtactactttgacacccttttcccccgaatccctgtacct
gtgttgcggcaagttgtatccaatcttgagaagatgaagctgcctactaaaccgtctggt
gcaactggggattctaaccgtcatggatctgatgacactgctcgccggccgccatcagtg
aaagctgcactttctgtctctttcggtcagcgtgccccccatcgtgcttcaaccagggac
tcatctcctgtgcgtcgcagcctcccaccaccaccttatgacagatctggcagtgatgat
ttaaaaagatctcccagccaccgtcgcagccagagtcgtgaatattctgacagggaatat
tctgagaaggacagggattgggatcgagatagggaaagagaaagggaaagggacagggat
cgtgatcgggataggaacagagatcggggtagggatagggataggaacagggatcggcat
agggataggaataaggataggaacagggacagggattgggatagagaaagagccaaggac
aaggagagggatagggagcgaacgcatgattacaatcgaaggtcaaggtactcagataaa
agggactatgaagagttacgtgatgataacaggcattatagagtagctagctctcatagg
agcagaagccgaactcgcagcaggagtcgaagcaggagcagaagtcgaagtttgcaagcc
ggcaatagtcattttgatcgtcattcaagtccaccgaaagagggaagcaaggagaagaca
tctgcatccagcaatttggcgaagcttaaggatctgtacggtgatttaagtgatcaaaaa
ggggatggctttgaaagggtacctaggagggacaacagtggcgaagaggtgattaggcta
ggtggttctacttggaaatag
DBGET
integrated database retrieval system