KEGG   Theobroma cacao (cacao): 18601276
Entry
18601276          CDS       T02994                                 
Name
(RefSeq) pre-mRNA-splicing factor 38B
  KO
K12850  pre-mRNA-splicing factor 38B
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18601276
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcc03041]
    18601276
Spliceosome [BR:tcc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    18601276
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    18601276
SSDB
Motif
Pfam: PRP38
Other DBs
NCBI-GeneID: 18601276
NCBI-ProteinID: XP_007032224
UniProt: A0AB32V917
LinkDB
Position
4:6457152..6462983
AA seq 446 aa
MEIQTCGKPINSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYAADPKTLWTWFEPYIK
DEEEFSPGSNGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKMKLPTKPSG
ATGDSNRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRSLPPPPYDRSGSDD
LKRSPSHRRSQSREYSDREYSEKDRDWDRDRERERERDRDRDRDRNRDRGRDRDRNRDRH
RDRNKDRNRDRDWDRERAKDKERDRERTHDYNRRSRYSDKRDYEELRDDNRHYRVASSHR
SRSRTRSRSRSRSRSRSLQAGNSHFDRHSSPPKEGSKEKTSASSNLAKLKDLYGDLSDQK
GDGFERVPRRDNSGEEVIRLGGSTWK
NT seq 1341 nt   +upstreamnt  +downstreamnt
atggagatacagacatgtggcaaaccgattaattcattattagaaaaggtgctgtgtatg
aatatactgtcttctgattatttcaaagagctttaccggttaaagacataccatgaagtc
attgatgaaatttacaatcaagttgatcatgttgagccatggatgaccgggaactgtcgt
ggtccttcgactgcattctgccttctttacaagttttttaccatgaagcttactgtcaaa
caaatgcatgggctgttgaagcatcccgattctccttacattagagccattggatttctc
tacttgagatatgctgcagatccaaagactttatggacttggtttgaaccttacatcaaa
gatgaagaggaattctcccctggatccaatggacgaatgactacaatgggtgtatacgtg
cgtgatttgcttcttggacagtactactttgacacccttttcccccgaatccctgtacct
gtgttgcggcaagttgtatccaatcttgagaagatgaagctgcctactaaaccgtctggt
gcaactggggattctaaccgtcatggatctgatgacactgctcgccggccgccatcagtg
aaagctgcactttctgtctctttcggtcagcgtgccccccatcgtgcttcaaccagggac
tcatctcctgtgcgtcgcagcctcccaccaccaccttatgacagatctggcagtgatgat
ttaaaaagatctcccagccaccgtcgcagccagagtcgtgaatattctgacagggaatat
tctgagaaggacagggattgggatcgagatagggaaagagaaagggaaagggacagggat
cgtgatcgggataggaacagagatcggggtagggatagggataggaacagggatcggcat
agggataggaataaggataggaacagggacagggattgggatagagaaagagccaaggac
aaggagagggatagggagcgaacgcatgattacaatcgaaggtcaaggtactcagataaa
agggactatgaagagttacgtgatgataacaggcattatagagtagctagctctcatagg
agcagaagccgaactcgcagcaggagtcgaagcaggagcagaagtcgaagtttgcaagcc
ggcaatagtcattttgatcgtcattcaagtccaccgaaagagggaagcaaggagaagaca
tctgcatccagcaatttggcgaagcttaaggatctgtacggtgatttaagtgatcaaaaa
ggggatggctttgaaagggtacctaggagggacaacagtggcgaagaggtgattaggcta
ggtggttctacttggaaatag

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