Theobroma cacao (cacao): 18601299
Help
Entry
18601299 CDS
T02994
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
18601299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tcc03009
]
18601299
Ribosome biogenesis [BR:
tcc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
18601299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR5
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
WD40
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_HPS5
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
WD40_Gbeta
PQQ_2
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
18601299
NCBI-ProteinID:
XP_007032264
UniProt:
A0AB32V657
LinkDB
All DBs
Position
4:complement(7911634..7917242)
Genome browser
AA seq
829 aa
AA seq
DB search
MLLKPYRTSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGSVGWHHQLTIHGD
STRRVSSLVWCCVGSKGLSSGRLFSSSIDGSVSEWDLFDLKQKIVLESIGVSIWQMAVAP
VNRLPALKESRSQHFGNGYLNDKYEYDDSDDDESSDSEDVSDLEQVHKKLVMEYRPVAVA
CDDGAVRIYTISDSDQLIYHKSLPRVSGRVLSVAWSHDSTRIYSGSSDGLIRCWNADLGH
EIFRSTVSLGGLGSGPELCIWSLLSLRCGTVISADSTGSVQFWNGDNGTLLQAHCNHKGD
VNALAAAPSQNRVFSAGSDGQVILYKLSNETSGNDKSSSEMKKWVYVGYVRAHTHDVRAL
TMAVPISSEASLFEEAKDVQDENGKKVKRIRRREKKPLDFSYSKWAHFGVPMLVSAGDDA
KLFAYSAKEFTKFSPHDVCPAPQRVPVQLVVNTSFNQTSFLLVQASYWLDILCVRVPDVG
SGPYGGLVTTNLVARVKSKACRKIICSAMSNSGDLFGYSDHIRPSLFVLSRQDGQSTWTI
SKRQLPQKLPSAHSMIFTSDGLRLLIAGHDRRIYVVDLESLKLLHTFIPCREEHEKEEPP
SEPPITKLFTSCDGQWLAAINCFGDIYIFNLEIQRQHWFISRLDGASVTAGGFPPQDNNV
LIITTSSNQFYIFDVEARQLGEWSMQHTFALPRRYQEFPGEVIGLSFSPSSSSHPSKSSS
LVVYSTRAMCSIDFGKPVDQDEESELVNGALLKFQGSLTNMKWKHWLRDSQTESKHTSRK
SNFDLIVFRDPVLFIGHLSKHSILIIDKPWMEVVKTFDAPPVQRHIFGT
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgctcctcaaaccttaccgaaccagctcaatcgactggaaaccttctccagtggttgcc
cttgcaaccagcgccgacgactcccaggttgcggccgctcgtgaggacggctccctcgag
atttggcttgtgtctcctggctctgttggatggcaccatcaactgactattcatggggat
tccactcgtcgagtttcttcgcttgtgtggtgttgcgttggttcaaaaggtctgtcttct
ggcaggttgttctcctcaagcatcgatggctcagtctcagaatgggatctttttgatttg
aagcagaagattgtgctagagtcaattggggtttcaatctggcagatggctgtggcacct
gtaaatagactgccagctcttaaagagtctaggtctcagcattttggaaatggatattta
aatgataaatatgaatatgatgatagtgatgatgatgaaagcagtgatagtgaagatgtt
tcagacttggaacaagttcataagaaactagttatggagtatagacctgtagcagttgcc
tgtgatgatggagctgtgcggatatacactatttctgattcggatcagttaatctaccat
aaatcattgcctcgggtcagtggacgcgttctaagtgtggcatggagccacgactcaact
aggatatattcagggagtagtgatgggttgataagatgctggaatgctgatttgggtcat
gaaattttcagaagtacagtttctcttggaggtttgggcagtgggcctgagctttgcata
tggtcattactttctttaaggtgtggaactgttattagtgcagacagcactggctctgtt
cagttttggaatggtgataatggaactcttctccaggcacattgtaatcataaaggtgat
gtaaatgccttggcagcagctccaagtcagaacagggtgttctctgctgggtctgatgga
caggttattctttataagctttctaatgagacatctggtaatgacaaatcttcttctgaa
atgaagaaatgggtatatgttggttatgtaagagctcatacccacgatgtcagagccttg
acaatggcagtgcctattagttcggaagcatctttatttgaagaggcaaaagatgtgcaa
gatgaaaatgggaaaaaggtaaaaagaatacgacgtagggagaagaagccccttgatttt
agttacagtaaatgggctcattttggagttcccatgcttgtctctgctggtgatgatgca
aagctctttgcctactctgctaaggagtttactaagttctcgccacatgatgtttgtcct
gcacctcagagagttccggtacaactggtcgttaatacaagtttcaatcaaacttctttt
ctcctggtccaggcttcttattggttagatattctctgtgttcgtgttcctgatgtgggt
tctggcccctatggtggtctcgttaccactaatttagttgctcgggttaagagtaaggca
tgccgaaagatcatttgcagtgcaatgtctaactcaggggacctttttggttattctgat
cacatcagacccagcctatttgtactaagtaggcaagatggccaaagtacgtggaccatc
agtaaaaggcaacttcctcagaaacttccatccgcacattctatgatttttacctctgat
gggttacgattgctgatagcaggccatgatagaaggatctatgttgtggatttggagagc
ttaaaactgctgcataccttcataccctgtcgtgaggagcatgagaaagaagaaccacct
agtgagcctcccataacaaaattgttcacgagttgtgatggccagtggttagctgctatc
aactgctttggagatatatacatattcaatcttgagatacagaggcaacactggtttata
tcaagattggatggtgcctctgttacagctggtggctttcctcctcaggacaacaatgtg
cttattatcacaacatcttcaaaccagttctatatatttgatgttgaagctaggcaattg
ggagaatggtcaatgcagcatacttttgctcttccccgaagataccaagaatttcctggg
gaggttattggcttatctttctccccctcatcctcctcccatccatcaaaatcatcatcg
cttgttgtttatagtaccagggcaatgtgctcaattgactttgggaagccagtggatcaa
gatgaggaaagtgagttggtaaatggagccttgttgaagttccaaggttctctcacaaat
atgaaatggaaacattggttgagagatagtcaaacagagtctaaacatactagtagaaag
agtaattttgatttaattgttttccgggaccctgttttatttattggacacctttcaaaa
cattccatcttgatcatagacaaaccctggatggaagtggttaaaacttttgatgctcca
cctgttcagagacatatttttgggacataa
DBGET
integrated database retrieval system
