Theobroma cacao (cacao): 18601626
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Entry
18601626 CDS
T02994
Name
(RefSeq) nipped-B-like protein B
KO
K06672
cohesin loading factor subunit SCC2
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcc03036
]
18601626
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
18601626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
PHD_2
zf-PHD-like
Motif
Other DBs
NCBI-GeneID:
18601626
NCBI-ProteinID:
XP_007032702
UniProt:
A0AB32V9B5
LinkDB
All DBs
Position
4:complement(16606518..16619706)
Genome browser
AA seq
1823 aa
AA seq
DB search
MSNPSSTSAVSDQPGPGLMGLAHRGIGLSNTIHSEVAQCLPLPSLPVFCGASDPELLLFD
DPTGGASRSLNRPEIIAQSSRIADLLRETDVSYLNLRDEASSATYDYVEPLELHVQVLQY
NPAAFEYVTPGLVKEQVSGGAVFERKPPESSFPHISQFQRDISSTYNQQTDVIANDAPKS
SSRKPKGKKKAANDVGLSVRPDPTELQDAIIGHFREMLEDFCGRAQIPSDDRDETEWLSL
PVNDVRMLVNEIMSVRTKRLLHLVPVDNLVKLLRVLDHQIHRAEGLSVDECEHQDSDVFS
SVFCALESIHASLAVMAHNDMPKQLYHEEIIERILEFSRHQIMDVMSAYDPSYRALHKPS
ENGAVEDDEDEELDAELGSASKKRRSTKSVKAKKSALNKVSGAVNAILQKLCTILGLLKD
LLLIEKLSDSCVLQLLKTSFTTFLVDNIQLLQLKAIGLITGIFYCYTQHRTYIIDEMVQL
LWKLPFSKRALRAYHLPDEEQRQIQMVTALLIQLVHGSANLPEALKQTSSGSPILEVSVD
DSYLTKCHESVQDTCCHFWTRVLQRLASVKTQDASELKVMIENLVTDLLTTLNLPEYPAA
APALEVLCVLLLQNAGLKSKDISARAMAIDLVGTIAARLKHDSLLCRNDKFWISEELLSG
DNDHESYPNGVCSICLDGKVEKVLYRCQGCQRFFHADCMGVREQEVPNRSWYCQFCVCKK
QLLVLQSYCESQYQDNENKNHGRSERSESSDPITKVEIVQQMLLNYLQDAASIDDIHLFV
RWCYLCLWYKDGPKSQQNFKYYLARLRSKAIVRDSGTVSSLLIRDSVKKIALALGQNNSF
SRGFDKILYLLLVSLRENSPVIRAKALRAVSIIVEADPEVLGDKRVQVAVEGRFCDSAIS
VREAALELVGRHIASHPDVGLKYFEKVAERIKDTGVSVRKRAIKIIRDMCNANPNFSGFT
SACIEIISRVSDDESSIQDLVCKTFYEFWFEEPSGLQTQYPGDGSSVPLEVAKKTEQIVE
MLRRLPNHQFLVTVIKRNLVLDFFPQSAKAAGINPVSLAAVRRRCELMCKCLLEKILQVE
EMSNVEAEVPTLPYVLALHAFCVVDPSLCMPASDPSQFVITLQPYLKSQVDNRVVAQLLE
SIIFIIDAVVPLMRKLPPSVIEELKQDLKHMIVRHSFLTVVHACIKCLCSVTKKAGNGGT
VVEYLIQLFFKLLDSQATDNKQQVGRSLFCLGLLIRYGNSLFSGPTNKNIDVASSLSLFK
KYLLMDDFSIKVRSLQALGFALIARPEYMLEKDIGKILEAALAPSSNVRLKMQVLQNLLE
YLLDAESQMGTDKAGNDAVHYSVEGGGSVPVAAGAGDTNICGGIVQLYWDNILGRCLDFN
EEVRQSALKIVEVVLRQGLVHPITCVPYLIALETDPLEVNQKLAHHLLMNMNEKYPAFFE
SRLGDGLQMSFIFMRSISGNARENLNEKSQSKFSGNLKGKSDAGSLTQARLGVSRIYKLI
RGNRVARNKFMSSIVRKFDNPSWNDSVVPFLMYCTETLALLPFSSPDEPLYLIYAINRVI
QVRAGALEANMKALSSNLLKADAQKTTNENGTVQLDHSRAVFNYMATVDLNGTIQEEAVV
QPALYHMTSIDLNGAIQQKLTHESISHYTPAVETTMHKMNHSETHTLSEEDMQKIQADCL
AATALQLLMKLKRHLKIVYSLNDQRCQAFSPNEPIKPGDVLTRQNIPFDISETHTSLPCT
YQELVQRYQEFKNALREDSIDYSIFTANIKRKRPNPRRGGKAMRMTGGDEDDDYDDEDWK
GGVRRLSNSGRKSYGSRGSRQRW
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatccaagcagcacgtccgcggtttcggaccaaccgggtccgggactgatgggt
ttggcccaccgtggtatcggcctttccaacaccatccactccgaggtcgcgcagtgcttg
cctcttccttcgttgcccgttttctgtggcgcttcggatccggagctcctactattcgac
gacccgactggtggagcttctaggtctttgaatcgaccggaaattattgcacagtctagt
cgaatcgccgatctgcttcgcgaaactgatgtttcatatctgaatcttagagatgaggcg
agttcagctacatatgactatgtggagcccttggaacttcatgtacaagttctccaatac
aaccctgcagcatttgagtatgtcactcctggtcttgttaaggagcaagtctctggtggt
gcagtgtttgaaaggaagccacccgagtcaagttttcctcatattagtcaattccagaga
gacattagcagcacttacaatcagcagactgatgtcatagctaatgatgcaccgaaatct
tcttccaggaagccaaaaggcaagaaaaaagctgctaatgatgttggcttatcggttcga
ccagatcctacagagcttcaagatgccatcattgggcacttccgtgagatgctagaggac
ttttgtggcagagctcaaattcccagtgatgatcgggatgagacagaatggttgtcattg
cctgtcaacgatgttagaatgcttgtaaatgaaattatgtctgtacgtacaaagagactt
ctacatttggttcctgtagataaccttgtgaaattattacgggttctagatcatcagata
catcgagcagaaggtttgtcggttgatgaatgtgagcatcaagactcagatgtattctct
tcagttttttgtgccctggagtccattcatgcttctttggcagtaatggcacataatgac
atgccaaagcaattatatcatgaagagatcattgaaaggattttagagttctccaggcac
cagataatggatgttatgtcagcttatgatccatcatatcgtgccttgcataaaccaagt
gaaaatggagcagttgaagatgatgaagacgaagagcttgatgctgaactaggttctgct
agcaagaaacgacgtagtactaagagtgttaaagccaagaaatcagcattgaacaaggtc
tctggtgctgtgaatgctatactacaaaaactctgcactattcttggtttactcaaggac
ttgttgttgattgagaaattatctgatagttgtgttctacaattgctgaagacaagcttt
actacttttttggtggataacatacagctcttgcaactcaaagcaattggtttgataact
gggatattctactgttacacccaacatagaacatatataatagatgaaatggttcagctg
ctatggaagttaccattttcaaagcgagcattaagagcatatcacctacctgatgaagaa
cagaggcagatccagatggttacggctctgctgattcagttggtccatggcagtgcaaac
cttcctgaagctttaaagcaaacatcaagtgggagtccgatcttggaagtctcagttgat
gatagttatttaaccaaatgtcatgaatctgtccaggatacatgctgtcatttctggacc
cgtgtccttcagcgccttgcttctgtaaagactcaagatgcctctgagttgaaagtgatg
attgagaatctagtcactgatttactgacaacattaaatctaccagaatatcctgctgca
gctcctgctttggaggttctttgtgttttattgctccaaaatgccggtcttaaatccaag
gacatctctgcacgtgcaatggcaattgatcttgttggcacaatagcagcaaggttgaag
catgattctctcctctgtaggaacgacaagttctggatatccgaagaattgcttagtggg
gataacgatcatgaaagttacccaaatggtgtatgttcaatttgtttggatggaaaggta
gaaaaagtgttgtataggtgccaaggttgtcaaagatttttccatgctgattgtatgggg
gtaagagaacaagaagttcctaatcgtagttggtactgccagttttgtgtctgtaagaag
caacttcttgtgttgcaatcatattgtgagtcacagtaccaggataatgagaataagaat
catggtcgctcagaaaggtctgaatcttctgatccaattacgaaagttgaaattgttcag
caaatgcttttgaattatcttcaagatgctgcttctattgatgatatccatctctttgtt
cgatggtgttatctttgcttgtggtataaggatggccccaaatctcaacaaaatttcaag
tactaccttgctagactgagatcaaaggcaatagtgcgtgactcagggaccgtttcttca
ctgttgataagggattcggtcaagaagattgctttggcactgggacaaaataattctttc
tctagagggtttgacaagattctttacttgcttctggttagcttaagagagaactctcct
gtaattagggctaaggctttacgagcagttagtattattgtagaagctgatccagaggta
ttaggtgacaaacgtgttcaagtggctgttgagggaaggttttgtgactctgcaatatct
gtcagagaagcagcactggaacttgttggcagacatattgcttcacatcctgatgttggt
ttaaagtactttgagaaggtggcagagaggattaaagacactggagtcagtgtgcggaaa
cgagcaatcaaaattattcgagatatgtgcaatgcgaatcccaacttctcaggatttaca
agtgcttgcatcgagattatttctcgtgttagtgatgatgaatcaagcattcaggatctt
gtctgtaagacattttatgagttctggtttgaggaaccttctggactgcagactcagtat
cctggagatggtagttctgttccattggaggtggctaagaagaccgagcagatcgttgaa
atgctaaggcggttgcctaatcaccagtttcttgtaactgtgattaagcgtaacttggtc
ctcgattttttccctcaatcagcgaaagctgctggaatcaaccctgtctcacttgcagcg
gtacgtaggcgatgtgagttgatgtgcaagtgcttactggaaaaaatattgcaagtggag
gaaatgagtaatgtggaagcagaggttcctacacttccctatgtgctggccttgcatgct
ttttgtgtagttgacccatcactttgcatgccagcttctgatccttcccaatttgtgatt
actctacagccgtatcttaagagtcaggttgataacagagttgttgcacagttactggag
agtataatctttataattgatgctgttgtgcctttgatgcggaagttgcctcctagtgtt
atcgaagaactaaagcaggacttgaagcacatgattgtccggcattcttttttgactgtt
gttcatgcttgcatcaagtgtctttgttctgtgactaaaaaggctgggaatggtggtact
gttgttgagtacctcattcagttatttttcaaactattggattcccaagcaactgataac
aagcagcaagtggggcgttcgctcttctgtcttggattgctaatccgctatggaaactct
ttatttagtggtcccactaacaaaaatattgatgttgccagcagtcttagtttgtttaaa
aaatatcttctaatggatgattttagtataaaggttagatctctgcaggcattaggcttt
gctctaattgctaggcctgaatatatgttggaaaaagacattgggaagatattagaggca
gcattagcaccaagttctaatgttcgtcttaagatgcaagtgttgcaaaatttgttggaa
tatcttcttgatgcggaaagtcaaatgggaacggataaagccggtaatgatgcagttcat
tattctgtagaaggtggcggtagtgtccctgtagctgcaggtgctggtgatactaacatt
tgtgggggtatagtccagttgtactgggataatattctggggagatgcttggactttaat
gaagaagttcgccaatctgccctaaagatagtggaagttgtgcttcgtcaaggtcttgtt
catcctattacttgtgtgccataccttatagctcttgaaacagatcctctggaagtcaac
caaaagttggctcatcatttgctaatgaatatgaatgagaaatatcctgcttttttcgaa
agccgtttaggagatggccttcagatgtcatttatcttcatgcgttccattagtggcaat
gcccgtgaaaatctaaatgaaaaatcccaatccaagttttctggaaatttgaaagggaaa
tctgatgctgggtctttaacacaagcaaggctgggagtttccagaatttacaagctcatt
cgtggaaatcgggttgctagaaacaaatttatgtcctcaattgtgcgcaaatttgataat
cctagctggaatgattcagttgtacctttcttgatgtattgtacagaaactcttgctttg
ttaccattctcatctcctgatgaaccgctctatttgatctatgctataaatcgagtaata
caagttagagctggggcacttgaggcaaatatgaaagccttgagttcaaatttgctaaag
gcagatgctcagaagacaactaatgaaaatgggaccgttcaactggatcatagtcgagct
gttttcaattatatggctacagttgatttgaatggaacaattcaggaggaggctgtggtt
cagcctgctctctatcacatgacatccattgatttgaatggtgcaatccaacaaaagctc
actcatgagtctatttcacattatactcctgcagtggagacaacaatgcataagatgaac
cattctgaaactcatactctctccgaagaggatatgcaaaaaatccaggccgactgtctt
gctgctactgcactacagcttctcatgaagctgaaaagacacctaaaaattgtttatagc
ctgaatgatcaaagatgccaggcattttctccaaatgaacctataaagcctggggacgtt
ctcacgaggcagaacattccctttgacatcagtgaaacacacactagcctgccttgcact
tatcaagaattggtgcagagatatcaggaatttaaaaacgcattgagggaagatagtatt
gattactcaattttcacagcaaacatcaaaaggaagcgcccaaatcccaggagaggaggg
aaagcaatgcgcatgactggtggggatgaagatgatgattatgatgatgaagactggaaa
ggtggtgtacggagactgagtaatagtggaaggaaaagttacggcagcagaggcagtagg
cagcgatggtag
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integrated database retrieval system