KEGG   Theobroma cacao (cacao): 18602336
Entry
18602336          CDS       T02994                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18602336
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcc03041]
    18602336
Spliceosome [BR:tcc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    18602336
 Complex C
   U5 SnRNP specific factors
    18602336
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 WD40_WDHD1_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_SPT8 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_SCAP ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_IFT122_1st WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_Nup120_160 Beta-prop_NWD2_C Nbas_N
Other DBs
NCBI-GeneID: 18602336
NCBI-ProteinID: XP_017975875
UniProt: A0A061EI20 A0AB32WAT0
LinkDB
Position
4:23716198..23717470
AA seq 342 aa
MEIVTRESENALSGPRPMEWSTVPYAPQGPDRNGNKRTSSLESPIMLLTGHQSAIYTMKF
NPTGTVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGSQIISASPDKTLR
AWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKY
QITAVSFSDASDKIFTGGIDNDVKLWDLRKGEVTMTLQGHQDMITGMSLSPDGSYLLTNG
MDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDT
TTRRILYKLPGHAGSVNESVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggaaattgttacgagggaaagtgaaaatgctttgtcaggtccaaggccaatggagtgg
tctactgttccatatgctcctcaaggaccagatagaaatggaaacaaacgcacatcaagt
ctggaatcaccaataatgttgctgacggggcatcagagtgctatatatacaatgaagttc
aatccaactgggactgttgttgcatctggatcgcatgacagagaaatttttctgtggaat
gtccatggagactgcaaaaacttcatggttctaaaggggcacaagaatgcagttttggat
cttcattggaccactgatggatcccagataatatcagctagccctgacaaaactttgaga
gcatgggatgttgaaacaggaaaacaaataaaaaagatggcagagcactcttcttttgtg
aattcatgctgtccatcacggagagggccacctcttgttgttagtggatctgatgatgga
actgctaaactttgggatatgcgtcagagaggtgccatccaaacatttcctgataaatac
caaattactgcagttagtttctctgatgcctcagataagatctttacaggtggtattgac
aatgatgttaagctttgggacctgcgtaaaggtgaagtaaccatgacacttcaaggtcat
caagacatgataacaggaatgagtttgagtcctgatggttcctatcttctcaccaacggt
atggattgtaaactctgcatatgggatatgcgcccttatgcgccacagaatcgctgtgta
aaaattttggaagggcaccaacacaattttgaaaagaacttgttgaaatgtggctggtca
cctgatggaagcaaggtcacagctggtagttcagataggatggtgtacatatgggatacg
acaactcgacgcatcttgtataagcttcctggccacgcaggatccgtgaatgaaagtgtc
ttccatcctaatgaacctatcattggctcatgcagtagcgataaacagatttatctaggg
gagatctga

DBGET integrated database retrieval system