Theobroma cacao (cacao): 18603021
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Entry
18603021 CDS
T02994
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18603021
03036 Chromosome and associated proteins [BR:
tcc03036
]
18603021
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
18603021
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
18603021
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
18603021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
AAA_22
UvrD-helicase
Mov-10_helical
Helicase_RecD
PhoH
DEAD
AAA_16
ATPase_2
SLFN-g3_helicase
AAA
SNF2-rel_dom
AAA_24
AAA_7
Motif
Other DBs
NCBI-GeneID:
18603021
NCBI-ProteinID:
XP_017974643
UniProt:
A0AB32W7A0
A0A061EL55
LinkDB
All DBs
Position
4:complement(28058713..28062851)
Genome browser
AA seq
876 aa
AA seq
DB search
MGMTGYKWDDEYSVIGDKGEIDFIDYENDNSVCNYNPLEEGPVVVSAPFSFIDGKPQSVF
VGETAFDSITIRNTSGDPMDLWTKIYASTPEDSFTLSLMKPPSANSEGNTSQGFIEFFDL
EDRMIQPGETLTIWLSCKAKEIGLHTTVVHFDVGGDRLERVAFLLVEDKISQSLASKKPY
SRGQRKKQFAVDAFVTGSRPARVMDRGFKNRLPRYDIPKDIRELVESKQTPDVIHAGLTK
DNYASFFKHLLILEELQLEEDMRAYNMENINMRKNGKFLSLKVPGLAERRPSLVHGDHIF
AKLACPDASETARVYQGFIHRVEADEVFLKFAPEFHLSHVDENLYNVQFTYNRINMRRLY
QAIDAAEGLELNLLFPSESPESRLIETTPLVPISCTLNEEQMCSIEMILGCKGGPPYVIY
GPPGTGKTMTVVEAILQLHKTRDCSRILVCAPSNSAADLILEKLLNAESVELKENEIFRL
NAATRPYNDVKPDFLRFCFFDELVFKCPPLNAITCYRIVISTYMSSSLLYAESVPKGHFS
HIFLDEAGQASEPESMVPIANLCQRDTVVVLAGDPMQLGPVIYSREAETLGLGKSYLERL
YECEFYSEGDENYVTKLVRNYRCDPEILYLPSLLFYNGELIPCKDYKGSFLNSVKFLPNK
EFPVFFFGIQGFDEREGSNPSWFNRIEASKVVEVVKSLTASGILGQEDIGVITPYRQQVL
KLQNALENLEMPDIKVGSVEQFQGQERKVIIISTVRSTVKHNEFDRTHCLGFLSNPRRFN
VAITRAISLLVIIGNPHIISKDPYWSRLIWRCADNNSYQGCALPERQVYVDEVSIEEDCW
NHDENTHGESGWVQDTIQSEVPKPVTDEAEWSDGWK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgactggttacaagtgggatgatgaatattcggtcattggagacaaaggagaa
attgatttcattgattatgagaacgataactctgtgtgtaattacaatccacttgaagag
ggtcctgttgtagtttctgcaccattttctttcatagatgggaagcctcaatccgtcttt
gtgggagaaactgcttttgattcgatcactatcagaaacacaagtggtgatccgatggat
ttgtggactaaaatttatgcatcgactcctgaggattccttcactctttctttgatgaaa
cctccatcagcaaattctgaaggaaatacaagccaagggttcattgaattttttgattta
gaggacaggatgatacagcctggagagactttaactatttggctgtcttgcaaagcaaag
gaaattggcttgcacactacagttgtgcattttgatgtggggggtgatagattagaaaga
gtggcctttctcttggtcgaagataagatctcacaatctttggcatctaagaagccatat
tctagaggtcagagaaagaagcaatttgctgtggatgcatttgttactggatcacgccca
gcaagggtaatggaccgaggttttaaaaacaggcttccccgctatgacattccaaaggat
atcagagagctggttgagagtaagcagactcctgatgttattcatgcaggtctaacaaag
gataattatgcatctttcttcaaacatcttttaatcttggaggagttacaactagaggaa
gacatgagggcctataacatggagaatattaacatgaggaagaatggaaagtttttatcg
cttaaggtcccagggcttgctgaaagaaggccttcccttgtccatggagatcatattttt
gctaagctcgcttgtccagatgcaagtgaaacagctagagtttatcagggttttatccat
agggtagaagctgatgaagtgtttttgaagtttgcaccagaatttcacttgtcccacgta
gatgagaatctttataatgtacagttcacgtataaccgaatcaatatgcggaggttatac
caagccattgatgctgcagaaggcttagagttaaatctcctttttccatctgagtccccg
gaaagtaggctgattgaaaccactcctctggtgcccatatcttgtacacttaatgaggag
cagatgtgctcaattgagatgatccttggctgcaaaggaggacccccttatgtgatttat
gggcctccaggtacagggaagaccatgacagtagtggaggcaatcctccagctccacaaa
actcgagattgttctcgaattcttgtctgtgcaccttcaaatagtgctgcagatttgata
ctagagaaactcctcaatgcagagtctgttgagctcaaagagaatgaaatattcagactt
aatgcagctacgcgtccatacaatgatgtcaagcctgattttcttcggttttgcttcttt
gatgagcttgttttcaaatgtcctccacttaatgctatcacctgctacagaatcgtcata
tcaacttacatgagttcctcccttctctatgcagaaagtgttcctaaaggccacttctct
catattttcttggatgaggctggtcaagcttcagagccagaaagcatggtccctatagcc
aacctttgccaaagagacacagttgtcgtgcttgctggagacccaatgcaattaggtcca
gttatatactccagagaagcagagactctcggactggggaagtcgtacttagaaaggcta
tatgaatgtgaattttattctgaaggggatgaaaattatgtaacaaaattggttagaaac
taccgttgcgacccagagatcctatatctcccttcattgcttttctacaatggtgaattg
atcccttgtaaagattacaaaggttcattcttgaattcagttaagtttcttcctaataag
gagttccctgtctttttctttggcatccaaggctttgatgagagggaaggaagtaatcca
tcatggttcaatcggattgaagccagcaaggttgtagaggttgttaagagtttgacagca
agtggcattttgggccaggaagatattggtgttataaccccctacaggcagcaagtcctc
aaactacagaatgcccttgagaatcttgaaatgcctgatatcaaggttggaagcgttgaa
caatttcaaggacaagaaagaaaagttattatcatatctactgtccgatcaacagtcaaa
cacaatgagtttgacaggacccactgtttgggatttttgagcaatccaagaaggtttaat
gtggccattacccgtgcaatatctttgcttgttattattgggaatccccacataatttcc
aaggacccatactggagcaggcttatatggcgttgtgcagataacaattcttatcagggc
tgcgctcttcctgagaggcaggtgtatgttgatgaagtttcaattgaggaggattgctgg
aaccatgatgaaaacacccatggtgaaagtggatgggttcaagacaccattcaaagtgaa
gttcccaaacctgttacagatgaagctgagtggtctgacggttggaaatga
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