KEGG   Theobroma cacao (cacao): 18603299
Entry
18603299          CDS       T02994                                 
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03040  Spliceosome
tcc04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18603299
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    18603299
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcc03041]
    18603299
   04121 Ubiquitin system [BR:tcc04121]
    18603299
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18603299
Enzymes [BR:tcc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     18603299
Spliceosome [BR:tcc03041]
 Complex B
  Other components
   Prp19 complex
    18603299
 Complex C
   Prp19-CDC5 complex
    18603299
Ubiquitin system [BR:tcc04121]
 Ubiquitin ligases (E3)
  U-box type E3
   18603299
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    18603299
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_Gbeta WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_HPS5 NBCH_WD40 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_WDR41 PROPPIN Beta-prop_Aladin Beta-prop_RIG_2nd U-box zf-Nse WD40_like WDR54 Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N V_ATPase_I_N PAS_11 KNTC1_N
Other DBs
NCBI-GeneID: 18603299
NCBI-ProteinID: XP_007035246
UniProt: A0AB32V9V8
LinkDB
Position
4:29607962..29614406
AA seq 523 aa
MNCSISGEVPEEPVVSKKSGLLYEKRLIERHISDYGKCPVTGEPLTMDDIVPVKAGKIVK
PRSLTAASIPGMLGMFQNEWDALMLSNFALEQQLHAARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQAPLPASAVTANVSALTNGKRAAEDVDMGPGAKRMRPGISDSIIAE
LTECNAALSQQRKKRQIPPTLAPIDALERYTQLSSHPLHKTNKPGITSIDINLSKDIVAT
GGIDSSAVLFDRTSGEILSTLSGHSKKVTSVKFVAQNDVFLSGSADKTVRIWQGSEDGKY
DCRHILKDHTAEVQAVTVHATNNYFVTASLDTTWCFYDLSSGICLTQVEDPSNSMGYTSA
AFHPDGLILGTGTTEATVRIWDVKSRGNVANFDGHTGAVTAISFSENGYFLATAAHDGVK
LWDLRKLKNFRSFELYDQDTPTNSVDFDHSGTYLAIAGSDIRVYQVGSVKADWTCIKTLP
DLSGTGRATCVKFGPDARYLAVGSMDRNLRIFGLPEDDASAES
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgaactgttcaatctccggcgaggtgccggaagagcccgtcgtctccaagaaatccggc
ttgctttacgagaaacgcttaatcgaacgacacatttcggattatgggaagtgtccggtt
acaggggaaccgcttacaatggacgacattgtcccggtcaaagccggcaagattgtaaag
cccagatcgttaacagcggctagcattcctgggatgcttggaatgtttcagaatgaatgg
gatgctttaatgctatccaattttgcactggagcagcagctacatgcagcaaggcaagag
ctaagtcatgcactctaccagcatgatgctgcctgccgtgtgattgcaagacttaaaaag
gaaagggatgaagccaggtcattacttgcacaggctgaaaggcaggcacccttgccagca
tcggcagttactgccaatgtttctgctcttaccaatggaaagcgagctgcagaggatgta
gatatggggcctggggcaaagagaatgcgtcctgggatttctgatagtattattgctgag
ttaacagaatgtaacgcagctctgtcacaacagcgtaaaaagcgccagatacctccgaca
ttggctcccattgatgctttggagaggtatacacaactttctagtcatccccttcacaag
acaaacaaaccagggatcacttcaattgatatcaatctttcaaaggatattgttgccaca
ggaggaattgattcaagtgctgtactctttgatcgaacatctggagagatcttatcaacg
cttagtggtcactcgaagaaggttacaagtgtaaaatttgtagctcagaacgatgttttt
ttaagtggatcagcagataagactgttcgcatttggcaagggtctgaagatggaaagtac
gattgcaggcatattttgaaggatcatacagctgaggtgcaagctgtcacagtccatgcc
acaaataactacttcgtaactgcttcccttgacacaacatggtgcttttatgatctttcc
tctggcatatgcttgacacaggttgaagacccttcaaattccatgggctatacatctgct
gcgtttcatccagatggtctcatccttgggacaggcaccaccgaagctactgttagaatt
tgggatgtgaagagtcggggaaatgttgccaactttgatggtcacactggggcagtaaca
gccatatctttctcagaaaatggttacttccttgcaactgctgcacatgatggtgttaag
ttgtgggatctgcgcaaattgaagaacttccgatcatttgaattatatgatcaagacaca
ccaactaactctgtggatttcgaccatagtggaacttaccttgcaattgcaggctcagat
ataagagtttaccaagttggcagcgtcaaagcagactggacttgcatcaaaactttacct
gatttgtctggcacaggtagagcaacttgtgtaaaatttggtccagatgcaaggtacttg
gcggtgggatcaatggatcgcaacctccgcatattcggccttcctgaagatgatgcttca
gctgagtcataa

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