Theobroma cacao (cacao): 18603982
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Entry
18603982 CDS
T02994
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18603982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18603982
03009 Ribosome biogenesis [BR:
tcc03009
]
18603982
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18603982
Spliceosome [BR:
tcc03041
]
Complex A
U1 snRNP components
U1 related factors
18603982
Complex B
18603982
Ribosome biogenesis [BR:
tcc03009
]
Eukaryotic type
Pre-60S particles
Helicases
18603982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
18603982
NCBI-ProteinID:
XP_007036326
UniProt:
A0AB32VB54
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All DBs
Position
3:1327473..1332344
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AA seq
626 aa
AA seq
DB search
MNPYDRRYGDPESYRQRRSDFMGQPPPVGLPAMGPEMVPPAGATSYPRGGNVPYGGPPTA
QPPTFQGRVSGAVPGTGNFDTYPSFQPVAGRLEMGRGGGMGNGHVGDRRSDGARGRGGGF
RGGGGGRDGRGGGGRGYGGRHGGSSRGDLDNVSLPRQNFGNLVPFEKNFYVESPAVRGMT
EQEAMVYRKTRDITVQGHDVPKPTRMFHEANFPDYCLEVIARLGFVEPTPIQAQGWPMAL
KGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGEGPIVLILAPTRELAVQIQEEAAK
FATHANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDE
ADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVESLARQFLRNPYKVIIGSPDLKA
NQSINQVVEVVTELEKYNRLIKLLKEVMDGNRILIFMETKKGCDQVTRQLRMDGWPALSI
HGDKNQSERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGR
TGRAGAKGTAFTFFTQANAKYARDLIKLLQDAGQVVSPALSTLARSAASSFGGSRGNFRS
RGRGGYGNRSSISGSNTIPLGARRPW
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttacgaccgtagatacggcgaccccgaatcttaccgtcagcgaaggagtgat
ttcatgggccaaccgcctccggtaggtctaccagctatgggcccggaaatggttccgcca
gctggtgctacctcttatccccggggtggaaacgttccttacggaggcccaccgactgcg
cagccgccgacttttcagggaagagtatccggagccgtcccaggtacaggaaatttcgat
acgtacccgagcttccaaccagtcgcgggaagattagagatgggccgcggtgggggcatg
ggtaatggtcatgttggagacaggagaagcgacggggcgagaggtcgtggtggcggcttc
agaggtggtggaggtggtcgtgatggccgtggtggtggtgggaggggttatgggggaagg
cacggagggtcgtctagaggggatttagacaatgtttcgcttccaaggcaaaattttgga
aatttggttccttttgagaaaaacttttatgttgagagtcctgcagttagaggaatgaca
gagcaagaagctatggtttatcgtaaaacacgggacattacagttcaaggacatgatgtt
ccaaagccaacaaggatgttccatgaagccaattttcctgattattgccttgaggttatt
gctagattgggttttgttgaaccaacgccaattcaggctcaagggtggcctatggctttg
aagggtagggatttaattggcattgctgagactggttctggtaaaacgctggcatatttg
ctgccggcattggtgcatgttaatgcgcagccacgattggcgcatggtgagggtcctatt
gtattaatattagcacctacgagagagttggctgttcagattcaagaagaagctgccaag
tttgcgactcatgctaatatcagaagtacttgcatctatggtggtgctcctaaaggacca
caaattcgggatcttaaaagaggtgttgagattgtaattgctacacctggtcgactgata
gacatgctagaagctcaacacacaaacttgcaaagagtgacttaccttgttctggatgag
gctgatcgaatgttggatatggggtttgagcctcaaataagaaaaattgttgctcagatt
cggcctgacaggcaaacattgtactggagtgcaacatggccaagggaggttgagtctcta
gcaaggcagtttttacgcaatccatataaggttataattggatcacctgatcttaaagca
aaccaatctataaaccaagttgttgaagtcgtaacagagctggaaaagtacaacaggcta
atcaaattgctcaaggaagtgatggatgggaatcgaatactcatattcatggagacaaag
aagggatgcgaccaagttactaggcagctgagaatggatggatggcctgctctatccatc
catggtgataaaaaccagtctgaaagagattgggtcctggctgaatttaagagtggcaga
agtcccataatgactgctactgatgtggctgcacggggtcttgatgtaaaggacataaag
tgtgtgatcaactatgattttccttccagcctggaggattatgtacataggattggtcga
actggtcgagcaggggctaagggaactgcttttaccttcttcacgcaggcaaatgcaaag
tatgctagggaccttatcaagctcctgcaagatgcagggcaggttgtctctcctgcatta
tctacattggcccgctctgctgcttcaagttttggaggttccaggggaaacttccgctcc
agaggacgtggaggttacggtaatcgttcttcgatatcaggatcaaatacaatacctctt
ggtgcaaggaggccttggtag
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