Theobroma cacao (cacao): 18604054
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Entry
18604054 CDS
T02994
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
18604054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18604054
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
18604054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
18604054
NCBI-ProteinID:
XP_017973885
UniProt:
A0AB32W4E4
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Position
3:1745010..1753015
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AA seq
942 aa
AA seq
DB search
MDENFDERNKLPELKLDAKQAQGFLSFFKTLPNDARAVRFFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGSGSDGLSSVTVSKNMFETIARDLLLERTDHTLELYEGSGSHWRLMKSG
SPGNLGSFEDVLFANNEMQDTPVVVALLPNFRENGCTIGFSYVDLTKRVLGLAEFLDDSH
FTNTESALVALGCKECLLPIESGKASECRTLNDALTRCGVMVTERKKTEFKARDLVQDLG
RLIKGSIEPVRDLVSGFEFAPAALGALLSYAELLADEGNYGNYSIRRYNLGSYMRLDSAA
MRALNVLESRTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVSEINSRLDLVQAF
VEDTELRQALRQHLKRISDIERLMRNIEKTRAGLQHVVKLYQSSIRIPYIKSALEKYDGQ
FSSLIKERYLDPFELFTDDDHLNKFISLVETSVDLDQLENGEYMISPSYDDALAALKNEQ
ESLELQIHNLHKQTAIDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTQFIILE
TRKDGVKFTSTKLKKLGDQYQKILEEYKNCQKELVNRVVQTTATFSEVFEPLAGLLSELD
VLLSFADLASSCPTPYTRPEITPADVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCEKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATH
FHELTALAHENVNDEPQAKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVISLAREKAAELEDFSPTSIISSDARQEEGSKRKRECDPIDMSRGAAKAHKF
LKDFADLPLESMDLKQALQQVNKLRGDLEKDAVNCNWLRQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaattttgatgaacgaaacaagcttccagagctcaaactagatgctaagcag
gctcaagggtttctctctttcttcaaaaccctacccaatgatgcaagggcagttcggttt
tttgatcgccgggattattatactgctcatggtgaaaatgcaacctttattgcaaagaca
tattaccgcactactactgctctccggcaactgggtagcggctctgatggcctttcaagt
gtaactgttagtaaaaacatgtttgaaacaattgctcgtgatcttctcctggagagaaca
gaccacactctggagctctatgaaggcagtggctcccattggaggttaatgaaaagtggc
agtcctgggaatctgggcagttttgaagatgttctgtttgccaacaatgagatgcaggac
acacctgttgttgttgcattgcttcctaacttccgtgaaaatgggtgcactattgggttc
agttatgttgatttaacgaagagggtacttggattggctgaatttcttgatgatagtcac
tttacaaatacagagtcggctttggttgctctcggttgcaaggaatgccttttgcccata
gagagtggaaaagccagtgaatgtagaactctcaatgatgctttgaccagatgtggtgtt
atggtaactgagagaaagaaaactgagtttaaagcaagggatctggttcaggatcttggc
agactaatcaaaggttccattgaaccagttcgagacttggtttctggatttgaatttgca
cctgctgctttaggagccttactatcttatgcagaactactggcagatgaaggcaattat
ggaaattatagcatccggagatacaatcttggcagctacatgagattagattctgctgct
atgagggcattgaatgtcctagaaagcagaactgatgcaaacaaaaattttagtttgttt
ggtcttatgaatagaacctgtaccgctgggatgggtaagcggttgcttcatatgtggcta
aaacagcctttgttagatgtaagtgagataaactcaaggctagatttggtacaagctttt
gtggaggataccgagcttcgccaagctttgaggcagcatctgaaaagaatttcagatatt
gagcgacttatgcgcaatattgaaaagacaagagctggtttgcagcatgttgtaaaactt
tatcagtcaagtataagaattccctacattaaaagtgccctggaaaaatatgatggacag
ttttcatccttgatcaaggaaagatatttggatccttttgagctcttcactgacgacgat
catttgaacaagttcatttctcttgttgaaacttctgtcgacctagatcaacttgaaaat
ggggaatacatgatttcacctagttatgatgatgccctagctgcactaaaaaatgagcag
gagtcactagagctccaaatacacaacttacataaacaaactgctattgatcttgatctg
ccagtagacaaggcattaaagttagataagggcacacagtttggacatgttttcagaatt
acaaagaaagaagagccaaaagtaagaaaaaagctctccacccaatttattattcttgaa
actcgaaaggatggagtaaaattcactagcacaaagcttaaaaagttgggggaccagtac
caaaagatacttgaggagtataagaactgtcaaaaagaactagtcaaccgagtggttcaa
actacagcaactttctctgaggtgtttgagcccttagctgggttgctctccgaattggat
gtcttgcttagttttgctgatttagcttctagttgccctaccccatacacaagacctgaa
attactccagcggatgtaggagatattgtattagaaggaagtagacatccctgtgtggag
gcgcaagactgggtgaattttataccaaatgattgtagacttgtaagaggaaagagctgg
ttccagatcatcactgggcctaatatgggtggaaaatcaacattcatccggcaggttggt
gtcaacattctgatggcacaagtaggttcttttgttccttgtgaaaaagctagcatttct
gtccgagactgcatttttgcccgtgttggtgctggtgactgccaactacgtggagtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggagctactgacaagtca
ttgataatcattgatgagttggggcgaggaacatcaacctatgatggatttggtttagca
tgggccatatgcgagcatattgttgaagtgatcaaagcacctactttgttcgctacccac
ttccatgaactgactgcattagctcatgaaaatgtcaatgatgagccacaggcaaaacag
attgttggtgtggcaaactatcatgttagtgctcacattgactcatcaagtcgcaaattg
acaatgctgtacaaggttgagccaggtgcctgtgatcaaagttttggtatccatgtagca
gaatttgccaactttcctgaaagtgttatatcccttgcaagagaaaaggctgctgaattg
gaagatttctcgccaacttcaatcatttccagtgatgctagacaagaggaaggttctaaa
aggaagcgagagtgtgatcctattgacatgtctagaggtgctgcaaaggctcacaagttc
ttgaaggactttgctgatttgccattagagtctatggacctgaagcaggctctgcaacaa
gtaaacaagctaaggggtgacttagaaaaggatgcagtaaactgtaactggctccggcaa
ttcctttag
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