Theobroma cacao (cacao): 18604229
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Entry
18604229 CDS
T02994
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18604229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18604229
03012 Translation factors [BR:
tcc03012
]
18604229
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18604229
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18604229
Translation factors [BR:
tcc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18604229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_16
T2SSE
Dicer_dimer
ATPase
AAA_30
Motif
Other DBs
NCBI-GeneID:
18604229
NCBI-ProteinID:
XP_017973540
UniProt:
A0AB32W3H7
LinkDB
All DBs
Position
3:3347724..3362924
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AA seq
1193 aa
AA seq
DB search
MPCYAAIFQGYLRTTAMSLRPNSLQLNNTPKTLLKPCFFSFLSRKPPASFRRLHLRHGLV
TCSGYRAATASSRTPGLDWRNIALPSLQQQQSSNYGRYAYQDVSSDDSDHEFGSTQSQMA
ASTLDNIDEWRWKLTMLLRNKDEQEVVSRERKDRRDFEQLSALATRMGLHSCQYAKVVVF
SKLPLPNYRSDLDDKRPQREVILPFGLQRDVDLHLKAYLTRKAINSANFSDKPLSRSSCG
GRIAADEVPIEQEEPFTKISVVMERILLRRSLQLRNRQQEWQESPEGLKMFEFRRSLPAY
KLRDALLSVISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISAM
AVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRDLRGVSHVIV
DEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPTIHIPGFTYPV
REHFLENILEVTGYRLTPYNQIDDYGQEKMWKMQKQAQSLRKRKSQLTSAVEDALERADF
RGYSLRTRESLSCWNPDSIGFNLIEHVLCHIIKKERPGAVLVFMTGWDDINSLKDQLQVH
PLLGDPGKVLLLACHGSMPSSEQRLIFEKPKDGVRKIVLATNMAETSITINDVVFVVDCG
KAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPKCVYDTFADYQLPE
LLRTPLQSLCLQIKSLELGSITEFLSRALQPPELLSVQNAVEYLKIIGALDENENLTVLG
RNLSMLPVEPKLGKMLILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSG
QEYSDHIALVRAYEGWKEAEREQSGYEYCWKNFLSAQTLKAIDSLRKQFFYLLKDTGLVD
QNIENCNKWSYDEHLIRAVICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAGVP
KIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNISRGGLDGHLKMLGGYLEFFMKP
ALADTYLSLKRELEELIQKKLLNPTLDMPSSSELLSAVRLLVSEDQCEGRFVFGRQLPVS
SKKTVKEKIPGIGGGDNSKSQLQTVLARAGHGAPIYKTKQLKNNQFRSTVIFNGLDFMGQ
PCSNKKLAEKDAAAQALLWLRGEDHFSSRDVEHASVLLKKSKKRTSVHATKWS
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgccctgttacgcagccatatttcagggctatctcaggacaaccgccatgtctctgaga
cccaattccctccaactcaacaacacccctaaaacccttttaaagccttgtttcttctcc
tttctgtccaggaaaccccctgcttctttcaggcgtttgcatttgaggcatggcctcgtc
acgtgctctgggtatcgggctgctactgcttcttcccggactcctggcttggattggagg
aacattgccttgccttctttgcagcagcagcaaagctctaattacggtcgctatgcttac
caggatgtttccagtgatgactcggaccatgaattcggttctacacagtctcaaatggct
gcttctacccttgataatattgatgaatggagatggaaattgactatgcttcttcgcaac
aaagatgagcaagaggtggtgtcaagggagagaaaggacaggcgtgactttgagcaactt
tcagctctagcaaccaggatgggtttgcacagctgtcaatatgcaaaagtagttgttttt
agtaaacttccactgccaaattatagatctgatctggatgataagcggccacaaagagag
gtgatcttaccttttggcctgcaaagagatgtagatcttcaccttaaagcttaccttact
cgtaaggctataaacagtgctaacttttcagataaacctttgtcaagatcaagctgtggc
ggaagaattgctgcggatgaagtacctattgagcaggaagagccctttacaaagattagt
gttgtcatggagagaattcttctgcggagaagtttgcagctacgtaacaggcaacaagaa
tggcaggagtctcctgaaggactaaagatgtttgaatttcgaagaagcctgccagcatat
aaattgagggatgctttgctaagtgtcatctcacagaatcaggtggttgttgtctctggt
gaaactggttgtggtaaaaccacacaacttcctcagtacatattagaatctgagatagaa
gctgctcgtggagcttcctgtagtatcatatgtactcagcctagaaggatatctgctatg
gctgtttctgaaagagttgctgcagaaagaggggagaaattgggagaatctgttggttat
aaggtacgccttgagggaatgaaagggagagacacccgccttctcttttgtaccactggc
attttactgaggcgactacttgttgacagagatttgagaggtgtaagtcatgttattgtt
gatgagattcatgagcgtggaatgaatgaagattttcttcttattgtcttgaaagatctc
cttcctcgtaggccagagttgaggttgattttgatgagtgcaaccttaaatgcagagctc
ttttcttcttactttggtggtgccccgacaatccatattcctggttttacataccctgtc
cgagaacattttctggagaatattctagaggtgactggatacaggttgactccatataat
caaattgatgattatggtcaagaaaagatgtggaaaatgcagaaacaggcccaatctctc
agaaagaggaagagccagctaacttctgcagttgaggatgcacttgaaagggccgacttt
agggggtatagtttgcggactcgggagtctttatcttgttggaatcctgactcaattggt
ttcaatctaattgagcatgttctttgccacatcataaagaaagagaggcctggtgctgtt
ttggttttcatgactggttgggatgacataaactctctaaaagatcagctccaggttcat
cctctcctaggggaccctggcaaggtgttgttgcttgcatgtcatggttccatgcctagc
tctgagcagaggttaatatttgaaaagcccaaagatggagtgagaaaaatagttctagct
actaatatggctgagactagcatcaccatcaatgatgtggtttttgtggttgattgtgga
aaggcaaaagaaacatcctatgatgcactgaataatactccttgtttgcttccatcctgg
atctcaaaggctgctgcccggcaaagaaggggaagagctggccgtgttcagccaggcgag
tgttaccatctctatcccaaatgcgtgtatgatacttttgctgattatcaactgccagag
cttttaaggacaccactacagtctctatgtttgcaaataaaaagtctagaacttggaagt
atcacagagtttctttctagggcattgcagcctccagaacttctgtcggtgcaaaatgct
gttgaatatctgaagattattggagctttagatgagaatgagaacttaacggtgctagga
cgtaacttgtcaatgcttccggttgagcctaaacttgggaaaatgctgatattgggggct
atttttaactgtttagatccaataatgactgttgttgccgggctcagtgtcagggatcca
tttctgatgccatttgacaagaaggatcttgctgaatcggcaaaagcgcagttctcaggc
caggagtacagtgatcatattgcacttgtccgagcctatgagggctggaaagaagctgaa
agagagcagtctggttatgagtattgttggaagaattttctttctgcacaaactctcaag
gccattgactctttacgaaagcagttcttttatttgctcaaggatactggtctagttgat
caaaatatagaaaactgcaataaatggagctacgatgagcatctcatacgggcagtcatt
tgtgctggattgtttcctgggatatgctctgttgtgaacaaagagaagtcaatttcactg
aaaacaatggaggatggacaggttcttctgtactcgaattctgtaaatgctggggtaccc
aaaattccatacccatggctagttttcaatgaaaaggtaaaagtgaattcagtatttctc
cgtgattcaactggtgtttccgattctgtgctgcttttatttggagggaacatttctaga
ggtggactagatggacatctaaaaatgttgggaggatatttggagtttttcatgaaacct
gctttagctgatacatatttaagcttgaagagagagcttgaggaacttattcagaagaaa
cttttgaaccctacgttagatatgccgtcaagcagtgagctgctctctgcagtaaggttg
ctggtctcagaagaccaatgtgaaggcagatttgtttttggccgtcagttgccagtatcc
tcaaagaagacggttaaagagaaaataccaggtataggtgggggtgataattccaagagt
cagctgcaaacagtgcttgccagggctggacatggagctcccatctacaagacaaaacag
ctaaaaaataaccagtttcgctctactgttatctttaatgggctggattttatggggcag
ccttgcagcaataagaaacttgcagaaaaggatgcagctgctcaggctctgctgtggttg
aggggtgaagaccatttttcttccagagatgttgaacatgcatcagtgcttttgaaaaag
agcaaaaagagaacttcagtccatgctactaagtggagttaa
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