Theobroma cacao (cacao): 18604919
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Entry
18604919 CDS
T02994
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1
KO
K11274
chromosome transmission fidelity protein 4
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcc03036
]
18604919
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
18604919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mcl1_mid
WD40_WDHD1_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_Aladin
WDR55
Beta-prop_TEP1_2nd
Ctf4_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
EIF3I
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Tricorn_2nd
NBCH_WD40
Beta-prop_Vps41
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
WD_LRWD1
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_ELP1_1st
Beta-prop_VPS8
YiiM_3-alpha
Motif
Other DBs
NCBI-GeneID:
18604919
NCBI-ProteinID:
XP_007037684
UniProt:
A0AB32VBE1
LinkDB
All DBs
Position
3:24440368..24446585
Genome browser
AA seq
988 aa
AA seq
DB search
MKIKSLKLREAHKGSANASFCSILWDLNAHHLVTASSSEPSISIHDPLLPSNPPRVLRHH
RDGVTALALSPNSTCLSSGSIDHSVKLYKFPGGEFETNITRFTLPIRALAFNKSGSMLAA
AGDDEGIKLINTIDGSIARVLKGHRGPVTGLAFDPNGEYLASIDSIGTVIYWELQSGRTL
YTLKGVAPDTGSDTSILNVLSWSPDGETLAVPGLKNDIVMYDRDTAEKLFTLRGDHTQPI
CFMSWSPNGKYMATSSLDKQILIWDVNRKQDIDRQKFDDRICCMAWKPIGNALAVIDVMG
KYGVWESVVPSSMKSPTEDIPSSRSKNSNGLLFFDEEDEEDQELSMSGSLSDLGEDSHGE
SEPPSRKRLRKQSVIDDDQHEDVYNELNLCTKTEYRKKVHRINKESSDKERDGSRSMMTF
RPKMQEAFQPGSTPPQPGKRNFLCYNMLGSITTIKHDEYSHIEIDFHDTSTGPRVPPMTD
YYGFTMASLNENGSVFANPCKGEKNMSTLMYRPFSSWANNSEWYMRFEGEEVKAVALGGT
WVAAVTSLNFLRIYTDGGLQKHILSLNGPVVTAAGFKDELAIVTHISDCLPSNEQMLEFR
IFNISKGTQPFKGHLPLTPGSYLTWFGFTEEGQLSSYDSKGVLRVFTSQYGGNWLPLFSA
SKERKSGENYWVVGLNVSKLFCIVCKNPDSFPQVLPKPVLTLLNLSFPLASSDLGEEALE
NEFMLNNLHLSQIQKRIEVMADEGLDTTPLDDEAFDIEAAQDRCIFRLIASCCNGDKLVR
ATELVKLLSVEKSVRGAIQLATALKLPILAERFNNILEERLQSKTEVLKTSLPRSKHDRN
VKADVAASMALTATERSEISEPTFSSSSAKLSAPLLIKKVKSSDRVKFGKPKTDGDQTAC
LEDSREVNDAGKNAGPSQVKNLQTQRPSNPFLKLPNNQEEKKVEEVMSESQSQGPSNPFF
KSSNKVREATGIQQSHRPSNPFLKSTAK
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaaatcactgaaactaagggaagcccacaagggaagtgccaatgcctcattc
tgctccatcttgtgggacctcaatgcccaccatttggtgactgcttcgtcatctgaaccc
tctatttctattcacgatcctcttctcccttccaatccgccgcgggttcttcgccaccac
cgcgatggggtcaccgccttggctctcagccccaactctacttgtctttcctctggatct
attgatcattccgttaagctttataaattccctggtggagagtttgagactaatatcacc
aggttcacactgccaattcgtgcacttgcctttaacaaatcagggagcatgctggcagct
gctggtgatgatgagggcattaaacttattaatacaattgatggttcaattgctagggtt
cttaaagggcatagaggacctgtcacaggcttagcttttgatccaaatggagagtacttg
gcatcaattgattccattggaactgtcatatattgggaactccagtctggaagaacatta
tataccctcaaaggtgtagctcctgacactggctcagatacttcgattttaaatgttctt
agctggagtcctgatggtgagaccttagctgtccctggtttaaaaaatgacatagtgatg
tatgatagggacacggcagaaaagctgtttaccttgagaggtgatcatacacagcctata
tgtttcatgtcttggtcacctaatgggaagtacatggctacttctagtttggataagcaa
attttgatctgggatgttaaccggaagcaggatattgacaggcagaaatttgacgacaga
atatgttgtatggcatggaagcctattggaaatgcactggctgtcattgatgtcatggga
aagtatggagtgtgggaatcagttgttccttcctcaatgaagtctcctacagaagacatt
cctagctctcgatcaaagaacagtaacgggctgctcttttttgatgaggaggatgaggag
gatcaggagcttagcatgtcaggtagtttaagtgatcttggtgaggatagccatggtgag
tctgaacctcctagcagaaaaagattgcggaaacagtctgtaattgatgatgatcagcat
gaagatgtttataatgagttaaacttgtgtacaaaaactgaataccggaaaaaagtgcat
cgtattaacaaggaaagttcagataaagaaagagatggatcaagaagcatgatgacattt
aggccaaaaatgcaggaggcttttcagccaggttctactccaccacagcctggaaaaagg
aatttcttgtgctacaatatgcttggaagtataactacaattaaacacgatgaatattcc
catatagagatagattttcatgatactagcacaggtccacgagttccaccaatgactgat
tattatggtttcacaatggcttcactcaatgaaaatggaagtgtttttgcaaatccatgc
aagggcgagaagaacatgagtaccctcatgtatcgaccatttagcagctgggcaaataac
agtgagtggtacatgcgatttgaaggtgaagaagtaaaagcagttgcacttggtggcact
tgggtagctgcagtgacaagtcttaattttcttcgcatctacactgatggtggtttgcag
aaacatattctctcacttaatgggcccgtggtgactgcagcaggcttcaaagatgagcta
gcaattgttacccatatttctgattgtcttccatctaatgagcagatgctggagtttaga
atattcaacatatctaaagggacccaacccttcaaaggtcatcttccgctaactcctggt
tcatacctaacatggtttgggtttactgaagaaggccagttaagctcttatgattctaag
ggtgtgctacgggtttttacaagccaatatggtggcaattggcttcctcttttcagtgca
agcaaagagaggaagtctggtgaaaactattgggtggttgggttgaatgtgagcaagttg
ttctgtattgtttgtaaaaatccagattctttcccacaggtgctccctaaaccggttctt
actctgctaaacctgtcctttcctcttgcatcctctgatctcggagaagaagcccttgaa
aatgagtttatgctgaacaacctgcatctctcacagattcaaaaaagaatagaagtgatg
gctgatgaaggcttggacaccactcctcttgatgatgaggcttttgacatagaggcagcg
caagatagatgcatcttcaggctcattgcatcttgctgcaatggtgacaaacttgttaga
gctactgaacttgtgaagcttttatcagttgaaaaatcagttagaggcgccatacagctt
gccactgctctgaagcttcctattttggcagaacgattcaacaatatactcgaggaaaga
ttgcaaagtaaaactgaggttttaaaaacctctctccccagatcaaagcatgaccgtaac
gttaaagcagatgttgctgccagcatggccttaactgcaactgaaagaagtgagatttca
gaaccaactttttcatcatcttcagctaaactctcagccccacttcttataaagaaagta
aaatcttcggatagagttaaatttggaaagccaaaaacagatggtgatcaaactgcatgt
ttagaggacagcagggaggtgaacgacgcagggaagaatgctggccctagccaggtgaag
aacttacaaactcaacgcccttctaatccatttttgaagttgccgaataatcaggaagaa
aagaaggttgaggaggtgatgtctgaatcacagtcacagggtccatccaatccctttttc
aagtcttcaaacaaggtcagggaagcaacagggatacagcaatctcaccgtccttctaat
ccatttttgaagtcgacagccaagtga
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