Theobroma cacao (cacao): 18605549
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Entry
18605549 CDS
T02994
Name
(RefSeq) DNA mismatch repair protein MSH3
KO
K08736
DNA mismatch repair protein MSH3
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
18605549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18605549
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
18605549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Arfaptin
Motif
Other DBs
NCBI-GeneID:
18605549
NCBI-ProteinID:
XP_007038668
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Position
3:complement(28676417..28683927)
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AA seq
1115 aa
AA seq
DB search
MGKQKQQVISRFFAPKPKTPSTPTPPANPSSSPSPPSPPIPSPNVKATVSFSPSKRKLLS
THLTSTPKKPKTTLSPHTHNPVPLQSNPSLHQKFLHKLLEPSPRRPLEPTVELSGSDHKK
YTPLEQQVVDLKNKYPDVLLMVEVGYRFRFFGKDAEIAAKELGIYAHVDRNFLTASVPTF
RLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNRVGPFCRGLSALYTKATLEAAEDVGGK
EEGCGGESNYLVCVVEKGLEFSGSVSGSGAVDVRVGIVGVEISTGDVVYGEFDDGVMRSG
LEAVVFSLAPAELLVGEPLSKQTEKLLLAYAGPASNVRLEHASCDCFKGGGALAEVMSVY
EKMVEDNLASNVNQSLEATEYSHSSIQGVMNMPDLALQALALTIRHLKQFGFERIVCLEA
SFRSLSSSLEMNLSANTLQQLEILRNNSDGSESGSLLQIMNHTLTIYGSRLLRHWVTHPL
CDRTMISARLDAVSEIALSMGCYKVSQSIIEIDGEDSDVTIAQPEFYSVLSSVLTFLGRS
PDIQRGITRIFHRTATPAEFIAVIQAILSAGKQLQRLHIDEEHEDNCSKKVRVGIVQSAL
LKRLILTASSSNVLGNAAKLLSFLNKEAADKGDLTNLIIISNNQFPEVARARKAVQLAKE
KLDNLIFLYRKRLGKGNLEFMCVSGTTHLIELPIDANVPSNWVKVNSTKKTIRYHPPEVL
TALDQLTLANEELTIICRAAWDSFLREFGEYYSEFQAAVQALAALDCLHSLATLSRNKNY
VRPIFVDDNEPVQIQIHSGRHPVLETILQEGFVPNDTTLHADRECCQIVTGPNMGGKSCY
IRQVALIAMMAQVGSFVPAASATLHVLDAIYTRMGASDSIQQGRSTFLEELSEASQILHS
CTARSLVVIDELGRGTSTHDGVSIAYATLHHLLEQRKCMVLFVTHYPRIADIKVEFPGSV
EVYHVSYLTAHNDEVTMDAKSDHEVTYLYKLVPGVSARSFGFKVAQLAQLPSSCISQAII
MATRLEAIESSRVRKKSEERQPETSSSDQELETQENILKSIGSFSSERLENLEEFASAFS
DLLLNLKSARTDDDLGKSFQLLKEARSIAKELINR
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggggaagcaaaagcaacaagtcatttctcgtttttttgcccccaaacccaaaacccca
tccaccccaactccaccagcaaacccttcatcttctccgtctcctccttcaccgccaatc
ccatcacccaacgtaaaagcaactgtctctttttccccttcaaagcgcaaactcctctca
acccacctcacttccactcctaagaaacccaaaaccacgctttcacctcacacccacaac
cccgttcctcttcagtctaatccttccctccaccaaaaattcctccacaaacttctggaa
ccttctccacgacgtccgcttgaacctaccgtcgaactttccggatccgaccacaaaaag
tacaccccactagaacaacaagtggtggatttaaaaaacaaatacccggatgttcttctc
atggtggaagtcggttacaggttccgattcttcgggaaggatgcggaaatcgcggcgaaa
gagttgggaatatatgcccacgtggaccgcaacttcttaacggctagcgtacctactttt
cgactgaatgtccacgtgaggaggctggtcagtgcgggatacaaggttggtgtggtgaaa
cagacagaaacggcggcgattaaggcgcatggttcgaaccgagttggaccgttttgcagg
ggtttgtcggcattatacacgaaggctacgctggaggccgcggaggatgtgggagggaaa
gaggaagggtgtggtggagagagtaattatttggtttgcgttgtggagaaaggtttggag
ttttcggggtctgtttcaggttctggtgcggttgatgtgagggttggaattgttggagtg
gagatttcaacgggggatgttgtttatggggagtttgatgatggagttatgaggagcggg
cttgaagctgtggtttttagcttggctcccgctgagttattggttggagaaccgctttcg
aaacaaacagaaaagttgttattggcatatgctggacctgcttcaaatgttcgtctggag
catgcctcttgtgattgtttcaagggtggtggcgcacttgcggaagtgatgtctgtgtat
gagaagatggttgaagataatttagccagtaatgtgaatcagtcattggaggcaacagaa
tattctcactcttcaattcagggggttatgaacatgccagatttggctttacaagctttg
gccttaaccattcgtcatctcaagcaatttggatttgaaagaattgtgtgccttgaagct
tcatttcgttccttatcaagcagtttggagatgaatctttcagcaaatacacttcaacaa
ttagagattttgaggaataattcagatgggtctgaatctggctccttgctgcaaattatg
aaccatactcttactatttatggatcaaggcttcttagacactgggtgactcatccttta
tgtgatagaaccatgatatctgctcgacttgatgctgtttctgaaattgctttgtccatg
gggtgttataaagtctcacaaagtatcattgagatagatggggaagattctgatgtgacc
attgcacaaccagaattctactctgtgctttcctcagttttaacttttttaggaagatca
cctgatattcagcgtggaataacaagaatcttccatcgaactgccaccccagcagagttc
attgcagttattcaagctattttatctgctggaaagcaacttcagcggcttcatattgat
gaagaacatgaagacaattgcagtaagaaagtgcgagtagggattgtgcagtcagctctg
ttgaaaaggttgattttgactgcttcatcatccaatgttcttggcaatgctgcaaaactg
ctatctttcctaaacaaagaagcagctgataaaggggatttaacaaacttaatcatcatt
tctaacaaccaatttccggaggttgctagagctaggaaagcagttcaattggcgaaggag
aaactggataacttgattttcttgtatagaaagcgacttgggaaaggcaatttggaattt
atgtgtgtgtcaggaaccacacatttgatagagctacccatagatgccaatgtaccttca
aactgggttaaggtaaatagtaccaaaaagacaataaggtatcatccgcctgaagtattg
actgctctagaccagttaacactggcaaatgaagagctcaccattatctgtcgagctgct
tgggacagctttcttagggaatttggtgaatattactccgagtttcaagctgctgttcaa
gcacttgctgctttggactgtttgcactctcttgccactctctcaagaaataagaattat
gttcggcctatctttgtggatgacaatgaacctgttcagatacaaatccactccggtcgt
caccctgtgttggagaccatcttacaagagggttttgttccaaatgacacaacattgcat
gcagacagggagtgttgtcagattgttactggtcctaatatgggtggaaagagttgctac
attcgccaggttgcactaattgcaatgatggctcaggttggttcctttgtaccagcagca
tcagctactttgcatgtgttagatgctatctacacacgcatgggtgcttctgacagtata
caacaagggagaagtacatttctagaagaactaagtgaggcttctcaaatactccacagc
tgcacagcacgctcactggttgtaattgatgagcttggaagaggaactagtacacatgat
ggtgtatctattgcttatgctacattacatcatctgttggagcagagaaaatgcatggtc
ctctttgtaacccactaccctagaattgctgatattaaagttgaatttcctggttctgtg
gaggtatatcatgtttcatatctgactgcacataatgatgaggttactatggatgcaaaa
tctgatcatgaagtcacgtacctatataagcttgttcctggtgtttctgcaaggagtttt
ggattcaaggttgcacagcttgcccagctgccttcatcatgcatcagtcaagcaattatc
atggctacaaggctggaagcaattgaaagcagcagagtgagaaagaaatcagaagaaagg
cagccagaaacatcatcgagtgatcaagaactagaaacacaagagaacatactgaaatcc
attggtagcttctccagtgaaaggctagagaatttagaagaatttgccagtgctttcagt
gacttgcttttgaacttgaaatctgcaagaacggatgatgaccttggcaaaagctttcag
ttattgaaagaggctagaagcattgcaaaggaattgataaacagataa
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