Theobroma cacao (cacao): 18605550
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Entry
18605550 CDS
T02994
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18605550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18605550
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
18605550
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
18605550
NCBI-ProteinID:
XP_007038670
UniProt:
A0AB32VDL9
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Position
3:28683987..28687743
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AA seq
200 aa
AA seq
DB search
MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPTLVPDWQIGECVAIWW
RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFNMITT
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtaacgtcaccggtggtgaacacgtatccactgtcgagctacaccttcggcaccaaa
gagccgaagatggagaaggacacgtccgtcgcggatcgccttgctcgcatgaaagtcaat
tatatgaaagagggtatgaggacaagcgttgaagcaattttactggtccaagaacataat
catcctcacattcttcttctgcaaattgggaacacattctgcaaacttcctggtgggcgc
ctgaagcctggagagaatgagattgagggtttgaaaaggaagctgaccagcaagcttgga
gctaattcacccactcttgtgccagactggcagattggtgaatgtgtggccatctggtgg
aggcccaactttgagaccataatgtatccatattgtcctccccacatcacaaaacccaag
gagtgcaagaagcttttccttgttcacttgtctgagaaagagtactttgcagtaccaaaa
aatctgaaacttcttgctgtaccgttgtttgagctatatgataatgttcagagatatgga
ccagtcatatcaaccattcctcagcagctttccagattccagttcaacatgattactact
tga
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