Theobroma cacao (cacao): 18605867
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Entry
18605867 CDS
T02994
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
18605867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tcc04121
]
18605867
03036 Chromosome and associated proteins [BR:
tcc03036
]
18605867
Ubiquitin system [BR:
tcc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
18605867
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
18605867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
Beta-prop_WDR41
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
MIOS_WD40
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
18605867
NCBI-ProteinID:
XP_007039212
UniProt:
A0AB32VFG4
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All DBs
Position
3:complement(30428038..30431087)
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AA seq
343 aa
AA seq
DB search
MENSTQESHLRSDNSITYESPCPVYAMALSSAPSRTSLNHQRIALGSFIEDYANRVDIIS
FDPETLSFKTHPTLSFDHPYPPTKLMFQPNRKSPSSSSSDLLASSGDYLRLWEVRESSIE
PFSVLNNSKTSEFCAPLTSFDWNDVDPKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEV
YDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDSPLLRLAWNKQDLRYMATI
LMDSNKVVILDIRSPTMPVAELERHRASVNAIAWAPQSGRHICSAGDDTQALIWELPTVA
GPNGIDPLSMYSAGSEINQLQWSAAQPDWIAIAFSNKMQLLKV
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgactcaagaatcccacctgagatccgacaactccataacctacgaatcg
ccctgcccagtttacgccatggccttatcttccgcgccttcccgcacgagtctcaaccac
caacgcatcgctctcggcagtttcatcgaagactacgctaacagagtcgacataatctca
ttcgatcctgaaaccctttccttcaaaacccacccaactctttctttcgaccacccttac
ccacccacgaaactcatgttccaacccaaccgaaagtccccttcctcttcttcctccgac
ctccttgcttcatccggcgactacctccgcctctgggaagttcgagagtcttccatcgaa
cctttctccgttctcaacaacagcaaaaccagcgagttttgtgcccccttaacttccttc
gattggaacgatgttgaccccaagagaatcgggacctccagcatcgacaccacgtgtacc
atttgggacatcgaaaaaggcgttgttgaaacccagttgatcgctcacgataaagaggtt
tacgacattgcttggggtgaagctagagtttttgcttccgtttccgctgatgggtccgta
aggattttcgatttaagagacaaagaacattcgacgattatatatgagagtcctcaaccg
gattcccctttgttaagattagcttggaacaagcaagatttgaggtatatggctacgatt
ctaatggatagcaataaagttgtgattttggatataaggtcacctacaatgccggtagct
gagctggagaggcatcgagccagtgtcaatgcgattgcctgggctccacaaagtggtagg
catatatgttctgctggggatgatacgcaggcacttatttgggagttgcctacggtggct
ggacctaatgggattgatcctttgtctatgtactcggctggctccgaaatcaatcagttg
cagtggtccgctgcacagcctgattggattgccattgctttttctaacaaaatgcagctg
ctcaaagtttga
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