Theobroma cacao (cacao): 18606113
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Entry
18606113 CDS
T02994
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03013
Nucleocytoplasmic transport
tcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18606113
03015 mRNA surveillance pathway
18606113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18606113
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
18606113
5.6.2.5 RNA 5'-3' helicase
18606113
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
18606113
mRNA cycle factors
Common to processing body (P body) and stress granule
18606113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
Helicase_RecD
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
18606113
NCBI-ProteinID:
XP_007039605
UniProt:
A0AB32VBT4
LinkDB
All DBs
Position
3:31742751..31754004
Genome browser
AA seq
1266 aa
AA seq
DB search
MDSQFETASQPDPATDAYIFLEFNTQGESDFEYTDFRDTIRSWPTPSDTTAADRSGSDHQ
SDTAASSSPSSASKGAGRGATSNNNSNSNSVSNSGAVVDALATGISGLNFEETVGDEDGG
YEYGKGDFAEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQAVGHVIKLTAQEEVALELRASQGVPVDVNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPC
LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD
SFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNG
LLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNIGSAASSSP
NADRRSSRARGTYMPPGPPNGTHKPGVHPTGFPMPRVPLPPFPGSPSQPYAIPTRGAVHG
PVGAVPQVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQNVGTIGSTFNFPLENPNSQPS
VGGPLSQPGFVNNMPVQGPSQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNVADFSTQAS
QSAYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGTGNDFMSQDYMNHGSQGLFTQVGFND
PSQDDASQSHFGVANPNQLQSQGLMNSLYSQPFAHYNTQPLNLQAPQQQQPQQGQGSQNQ
KLHYNG
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaattcgaaacggcctcgcaacccgacccggctaccgacgcttacatcttc
ctcgaatttaacacccaaggcgagtccgatttcgaatacacggacttccgcgacacgatt
cgttcttggcccacaccctccgacaccactgccgccgatcgctccggctccgaccaccag
tcggacactgctgcctcctcttcaccctctagcgcttccaaaggcgctggccgtggcgca
acgagcaataacaacagcaatagcaatagtgttagcaatagtggggccgtggttgatgcg
ttagcgacggggattagtggattgaattttgaggagacggttggggatgaggatggcggt
tatgagtacggaaaaggtgatttcgccgagcacgcttgtaggtattgcggggtttcgaat
ccagcttgcgtggttcgctgtaacgttccttcgtgtaggaagtggttttgtaattcaaga
gggaatacatcaggctcgcatattgtgaatcatcttgtacgagctaaacacaaggaagtc
tgccttcataaggatagtcctttgggagaaacaattcttgaatgctacaactgtggatgc
agaaatgttttccttcttggttttatatctgctaagacagagagtgttgttgttcttctt
tgtagggaaccttgtttgaatgttaatgctttgaaagacatgaattgggacttgagtcag
tggtgtccccttattgatgataggtgctttttgcagtggctggttaagatcccatccgaa
caagaacagttaagggcacgacagataagtgctcaacaaataaacaaggtagaagagctt
tggaagacaaatcctgatgcctcccttgaagatcttgagaagcctggtgtagatgatgaa
cctcagcctgtggccttgaaatatgaagatgcttatcagtatcaaaatgtttttgcgcca
cttattaagctggaagctgactatgataaaatgatgaaagaatctcaaagcaaggacaat
gtcacagttcgatgggatattgggttaaacaagaaacgtattgcatattttgtctttcca
aaggaagacaatgagcttcgtctagtacctggtgatgagttgcgactgcggtattcagga
gatgctgcccacccagcatggcaggctgttgggcatgtgatcaagctaacggcacaagag
gaggttgcccttgagctccgtgccagtcagggagtgcctgttgatgtgaaccatgggttt
agtgttgattttgtctggaagagtacaagctttgaccggatgcagggggcaatgaaaaca
tttgcagtcgatgaaacaagtgttagtggatatatttaccaccatttgcttggccatgaa
gttgaggttcagatggttcgtaacacattgcctcgtcgttttggtgcacctggtctgcca
gaattgaatgcatctcaagtttttgctgtaaagagtgttcttcagaagcctataagcttg
attcaggggccccctggcacaggaaaaactgtcacttctgctgccattgtatatcacatg
gctaaacagggtcaggggcaggttctggtgtgtgctccaagtaatgtggctgttgatcag
ctagctgaaaagataagtgctactgggttaaaggttgtaaggctttgtgcgaaatcaagg
gaagccgtgagttctcctgttgaacatttgacgcttcattatcaggttcgacatcttgac
acatctgagaagagtgaacttcacaagttacaacaattgaaagatgaacaaggtgagttg
tcaagcagtgatgagaaaaagtacaaagcactgaagcgagcaacagagagggaaatatcc
caaagtgctgatgtcatttgttgcacttgtgttggggctggagatcctagattggctaat
tttcggttccgccaggttcttattgatgaatctactcaggcgacagaacctgagtgtctc
attcctttagttcttggagcgaagcaggttgttcttgtcggtgatcattgccaacttggt
cctgttattatgtgcaagaaagcagctcgtgcaggactagcgcagtctctatttgaacgt
ctagttttacttggtgttaaaccaattagattgcaggttcaataccgaatgcacccgtgt
ttgtcagagtttccttctaacagcttctatgaaggcacattacaaaatggagtgacaatc
aatgaaaggcagtcatcgggcattgattttccttggcctgtgccaaatcgtcccatgttt
ttttatgtacagatgggacaagaggagattagtgctagcggaacatcatatctcaatcga
actgaggccgcaaatgttgagaagattgtaaccacattcttgaggagtggtgttgttcct
agtcagattggggtcataacaccttatgagggacaaagggcatatattgtgaattatatg
tcaagaaatggtgctttgagacagcagctttacaaggaaattgaggttgcaagtgttgat
tcattccaaggacgggaaaaagattacatcatcttgtcttgtgtgagaagtaatgaacat
cagggcattggatttctaaatgatcctcgcaggctcaatgttgccctaacacgtgctcga
tatggtattgtaattcttggaaaccctaaagttcttagcaaacaacctctgtggaatggt
ttattgacacattacaaggaacacgagtgcctggttgaaggacccctcaataacttgaag
cagagtatggttcaattccaaaagcccaaaaagatctacaatgaccggagacttttcttt
ggtggtggacctgggattgtgcctaatgataatattgggtctgctgcctcatctagtcca
aatgctgatagaagaagcagtcgtgctaggggtacttatatgcctccaggcccgcccaat
ggtactcacaagcctggagtgcaccctactggattcccaatgcctcgggttcctcttcca
ccattccctggttctccttctcagccttatgctattccaactcgtggagctgtacatgga
ccagtgggagctgtcccccaggtccctcaaccaggaagtcgaggctttggggctgggcgt
ggtaatgcaggtgctcctattggtagtcatctcccacaccagcaaggcacgcagcaaaat
gttggaacaattggatctacttttaactttcctctggagaatccaaacagccagccatct
gtgggtggtccattatctcaacctggatttgttaacaatatgccagtccaagggccaagc
caaacatttcgtgatggattttcgatggggggaatgtcccaggatttcttgggtgatgat
ttcaagagccaaggctcacatgttccttataatgttgctgacttttcaactcaggcttct
cagagtgcctatgctgttgattatgttacacaaggagcacagggtgggtttccagggaac
ttcctaaaccagaattctcaagctggatattctcgttttggcactggaaatgatttcatg
tctcaggactacatgaatcatggatcacaaggcctgtttactcaggttggctttaatgac
ccttcacaagatgatgcatcacagagccactttggtgtggctaatccaaaccagcttcag
tctcagggcttgatgaattctctctactcccagccctttgcccactacaacacacagcca
ctaaacttgcaggctcctcaacagcagcaacctcagcagggccagggctctcaaaaccag
aaacttcactataatggttaa
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