KEGG   Theobroma cacao (cacao): 18606466
Entry
18606466          CDS       T02994                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03030  DNA replication
tcc03410  Base excision repair
tcc03420  Nucleotide excision repair
tcc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    18606466
   03410 Base excision repair
    18606466
   03420 Nucleotide excision repair
    18606466
   03430 Mismatch repair
    18606466
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tcc03032]
    18606466
   03036 Chromosome and associated proteins [BR:tcc03036]
    18606466
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18606466
DNA replication proteins [BR:tcc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    18606466
  DNA Replication Termination Factors
   ELG1-RFC complex
    18606466
Chromosome and associated proteins [BR:tcc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    18606466
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     18606466
  Check point factors
   HRAD17(Rad24)-RFC complex
    18606466
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Rad17 Mg_chelatase AAA_16 Viral_helicase1 nSTAND3 AAA_5 AAA_11 RuvB_N RCF1-5-like_lid AAA_19 AAA_assoc_2 AAA_28 AAA_24 MeaB AAA_30 AAA_18 IstB_IS21 bpMoxR AAA_3 RNA_helicase AAA_25 DNAX_ATPase_lid KTI12 ABC_tran AAA_7 NTPase_1 cobW NPHP3_N T2SSE SLFN-g3_helicase DO-GTPase1 SRP54
Other DBs
NCBI-GeneID: 18606466
NCBI-ProteinID: XP_007040143
UniProt: A0A061G644 A0AB32VET1
LinkDB
Position
3:complement(33825353..33828220)
AA seq 332 aa
MASSSSSSSGGYDVPWVEKYRPNKVSDIVGNEDAVSRLQVIAHDGNMPNLILSGPPGTGK
TTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDE
ADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRL
MVVVDAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLH
VKNMVRYVLEGRFDDACLGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
AHMRICDGVGSYLQLCGLLAKFSLVRETAKAA
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcgtcctcctcatcatccagcagcggcggttacgacgtgccgtgggtggaaaaatac
cggccaaacaaagtctcggatatcgtcggcaacgaagacgccgtgtctcgactccaagtc
atcgctcacgatggcaacatgcccaatctcattttatccggtcctcctggaactggtaaa
acaactagtattctggctcttgcacatgagcttttggggacaaactataaggaggctgtt
ttggagcttaatgcatctgatgacaggggtatagatgttgtcaggaacaaaattaagatg
tttgctcaaaagaaagtaactttacctcctgggcggcacaagatagttatcctggatgaa
gctgacagcatgacatctggtgcacaacaagccttgaggaggacaatggaaatatattca
aactctactcgttttgctcttgcttgcaatacatcgtctaaaatcattgagcctattcag
agcagatgtgccctagtccggttttcaaggttatctgatcaagagattctaggccgtctc
atggtggtggtagatgcagaaaaggttccgtatgttccagaaggtcttgaagccatcatt
ttcactgctgatggtgatatgaggcaggcattgaacaacttgcaggctacattcagtgga
ttccgttttgtcaaccaagaaaatgtttttaaggtttgtgaccagcctcatccattgcat
gtgaagaacatggtccgctatgtacttgaagggagatttgatgatgcgtgtttgggtctg
aagcaactatatgatttgggctattctcctactgatataatcacaacacttttcagaatt
ataaaaaattatgatatggctgagtacttgaaattggaatttatgaaggaaacagggttt
gcacatatgagaatctgtgatggagttggttcatatcttcagttgtgtggcctgctggcg
aagttttctctagttcgtgaaactgctaaagcggcataa

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