Theobroma cacao (cacao): 18606891
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Entry
18606891 CDS
T02994
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03030
DNA replication
tcc03420
Nucleotide excision repair
tcc03430
Mismatch repair
tcc03440
Homologous recombination
tcc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18606891
03420 Nucleotide excision repair
18606891
03430 Mismatch repair
18606891
03440 Homologous recombination
18606891
03460 Fanconi anemia pathway
18606891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcc03000
]
18606891
03032 DNA replication proteins [BR:
tcc03032
]
18606891
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18606891
Transcription factors [BR:
tcc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
18606891
DNA replication proteins [BR:
tcc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
18606891
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
18606891
MMR (mismatch excision repair)
18606891
DSBR (double strand breaks repair)
HR (homologous recombination)
18606891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF223
DUF936
RADX
zf-CCHC_5
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
18606891
NCBI-ProteinID:
XP_007040824
UniProt:
A0AB32VFI7
LinkDB
All DBs
Position
3:complement(35961107..35965211)
Genome browser
AA seq
911 aa
AA seq
DB search
MGVNLTGGAVGRIINREVASEKDLKPVLQVIELKEVQTTSKNQPQQQQEPKKSERFRLLL
SDGSLAQQGMLATNKNELVKSSKLQVGSIVQLTQYICNVIQDRMIVIIIELEVIIEKYDI
IGKPVPAPKSSRPTEVPTDQPGTVMVQTNTFGGSSVGGSKADKLNSAGTPLQQPRMNPLH
GSSFPNQAEPVRYPAANSPPVCPKAEPSAGFPGSSPLSGPYGAQNQAEPVRYPAANSPPV
YPKAEPSAGFPGSSPLSGPYGAQSTGFHNPRPAASRPLSTSNRQPIPAYQQPSPMYSNRG
PVAKNDAPPRIIPISALNPYQGRWTIKARVTAKGELRRYSNARGEGKVFSFDLLDSDGGE
IRVTCFNTAVDQFFNQIEAGRVYMISRGTLKPAQKAFNHLNNDYEICLDSTSIIQPCYED
DNKIPRQQFHFRAISDVEGMENNNIVDIIGVVSFISPAASIMRKNGTETQKRTLHLKDMS
GRSVELTLWGNFCNAEGQKLQFLCDSGEFPVLAVKAGRVSDFNGKAVGTISTSQLFINPD
FPEAHRLKEWFVDEGRNTPSVSISRETSSVGRTDNRKTISQIKDERLGTSEKPDWITVVA
TIAYIKLDNFCYTACPIMNGDRPCNKKVTNNGDGKWWCEKCDRSVDECDYRYIIQFQIQD
HTGVTWVTAFQESGEDLMGVSAKDLYYLRYENQNDEKFMEITRQVMFNKYMFKLKVKEET
FSDEQRVKSTVVKVEKVNFSSESRYLLDLIDKIKANDSSCFASKAEITTPNHGMDYTGIG
NDISRHLAPTAGREYGLPAYQGGQYGNQYSGFRLRETAASMDVFCNSCGVTGHSSTNCPT
FMNGPAQSMGRDCTGRISSEASVGRTSDECYKCHQSGHWAKDCPRSGPSYGSTDFSSGRY
GGVSRQQVGGF
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgaatctaacgggaggggcggtgggtcggattataaacagagaggtggcgagc
gagaaggatttgaaacctgtgcttcaagtgatagaactgaaggaggttcaaacgacgtcg
aagaatcagccacagcagcagcaagaacccaaaaagagcgagaggttcaggctattgcta
tcggatgggtccttggcgcagcaagggatgctcgcgaccaataagaacgaacttgtcaaa
tcctcaaagttgcaagttggctccattgttcagttgactcagtacatttgcaacgtcatc
caagatcgcatgattgttattattattgagttggaggtgataattgaaaaatatgatatc
attgggaagcctgttccagcaccaaaatcttctaggcccacagaagtccctactgatcaa
cctgggacagtaatggtacagaccaacacttttggaggaagctcagttggtggtagtaag
gctgataagctgaactcagcagggacccctctacagcagcctagaatgaatccattgcat
ggtagttcttttccgaatcaagctgagccagtaagatatccggctgctaattcaccacct
gtttgtcctaaagcagagccttctgctggttttcctggatcttcacctttaagtgggccg
tatggtgctcagaatcaagctgagccagtaagatatccggctgctaattcaccacctgtt
tatcctaaagcagagccttctgctggttttcctggatcttcacctttaagtggaccgtat
ggtgctcagagtacaggttttcataaccctaggccagcagcttcacgtcctctaagcacc
tctaaccgccaacccatacctgcctatcaacagccatccccaatgtactctaacagaggg
ccagtagccaagaatgacgcaccacccaggataatcccaatttctgctctaaatccctat
cagggaaggtggaccataaaagccagagtaacagcaaagggagaacttaggcgctatagc
aatgctcgtggtgaaggtaaagttttctcgtttgatctccttgattctgatggtggggaa
atacgggtgacctgctttaatactgcggttgaccaattctttaaccagattgaagctggt
agggtttatatgatttctaggggaacgctaaaacctgcacagaaggcatttaatcacctc
aataatgattatgaaatttgtcttgatagcacatcaataatacagccatgttatgaggat
gacaacaaaattccacggcagcagtttcattttcgggccataagtgatgttgaaggcatg
gagaacaataatattgtggatataattggtgtggtctcatttattagtcctgctgcttca
ataatgagaaaaaatggtacagaaactcagaagagaacccttcatttgaaggacatgtct
ggccgaagtgttgaattaactttgtggggaaatttttgcaatgctgaaggacaaaagctc
caatttttgtgtgattctggggagtttccagttctggctgtgaaagctggtagggtgagt
gattttaatgggaaggcagtgggtactatctctacaagccagttatttataaatcctgat
tttccggaggctcacaggctcaaggaatggtttgtcgatgagggaaggaacactccctct
gtctctatttctagggaaacatcaagtgtaggtaggacagataatcggaaaactatatca
caaatcaaagacgagaggctaggaacttctgagaagccagattggattacagttgtagca
actatcgcatacattaagttggacaatttctgctatacagcttgtcctattatgaatggg
gatcgtccatgcaacaaaaaggttacaaataatggagatgggaagtggtggtgtgaaaaa
tgtgataggtccgtagatgaatgtgactacaggtatataatccagttccagatacaagat
catacaggcgttacatgggtgactgcttttcaggagtctggtgaggatctcatgggggtg
tctgcgaaagatttgtactatttgaggtatgaaaaccaaaatgatgaaaaatttatggaa
atcacgcgtcaggttatgtttaacaagtatatgttcaagttgaaagtaaaggaggaaact
tttagtgatgaacagcgtgtgaagtcgacagtggtgaaagtagaaaaagtaaatttttca
tcagaatcgaggtaccttttggatttgattgataagattaaagcaaatgattctagttgt
tttgcatcaaaggcagagattaccacccctaatcacggaatggattatactggaataggg
aatgatataagcagacatctcgcaccaactgctggtagagaatatgggttacctgcatac
caaggtggtcaatatggaaaccagtacagtggttttaggcttagagaaactgctgcaagc
atggatgtgttctgtaacagttgcggagttactggtcatagctctacaaattgccctacc
ttcatgaatggtccagcacagtctatggggagggactgtactggtaggatatcttctgag
gcaagtgttggccgtacctcagatgagtgctataagtgccatcaaagtgggcattgggcc
aaagattgtccgaggtcaggtccatcttatggaagcactgatttttcgtctgggagatac
ggaggtgtttcgaggcaacaggttggtgggttttga
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integrated database retrieval system
