Theobroma cacao (cacao): 18607519
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Entry
18607519 CDS
T02994
Name
(RefSeq) RNA-binding protein 39
KO
K13091
RNA-binding protein 23/39
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18607519
Spliceosome [BR:
tcc03041
]
Common components
Common spliceosomal components
General mRNP proteins
18607519
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
18607519
NCBI-ProteinID:
XP_007041782
UniProt:
A0AB32VFW1
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Position
2:2846862..2854726
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AA seq
581 aa
AA seq
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MDFDEYEYLEKTVENTEPQKAKEDGNGGIDSVKSEERNRSRSSKHKREERADDYENEHRR
SKRSKSREESSRDLDRHKERGSRDGEKDRHRSSREHRDKDRDREERNGRDRERERERDRK
ERDRESERDRDREKERERSTRSQSRSEREQERSRDREFSERELRERDRESRRNKDKKENA
AEAEADPERDQRTVFAYQISLKANERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEF
YDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTLVAAGQTGPYSGGARRLYVGNL
HFNITEDQLRQVFEPFGSVELVQLPLDETGHCKGFGFVQFARLEDAKNALNLNGQLEIGG
RVIKVSTVTDQGLLEDVGTNAADLDDDEGGGLSLNSSSRALLMAKLDRSGTASSITGSVG
VAGNSTGLTATTATVLGAAPAVPSLVPPTLQAHVRTISGLPGVGLQLPSNGIPTIDTIGT
PSECLLLKNMFDPDLETEPDFDLDIKEDVQEECSKFGKLKHIYVDRDSAGFVYLRFEDTQ
AAMSAQRNLHGRWFAAKMITATFMVPQTYEAKFPDSKRLLE
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggattttgatgaatatgagtatttagaaaagacggttgaaaatactgagcctcaaaag
gcgaaggaagatggtaatggtggcattgatagtgtcaaatccgaagagaggaatcgaagt
cggagttcaaagcataagagggaggagagagctgatgattatgaaaatgaacatcgacgt
tccaagcgctcaaaatcacgagaggaatcatcacgtgatcttgaccggcacaaggaacga
ggctcaagagatggcgagaaggataggcacaggagcagccgagaacacagagacaaggac
agggacagggaggagaggaatgggagggacagagagagggaacgtgaaagagataggaaa
gagcgtgatcgtgagagtgagagggacagggacagggaaaaggagagagagaggtcaaca
agaagccaaagtcgatcagaaagagagcaagagagaagtcgggacagggagtttagtgaa
agagagttgagggaacgagacagagaaagcaggaggaataaagacaaaaaggaaaatgca
gcagaggctgaggctgatccagaaagagatcagagaactgtatttgcttatcagatatct
ttgaaggctaatgaaagagatgtttatgagttcttctctagggctggcaaggtacgagat
gttcgcctcataatggatcgaaattcaagacgttccaagggggttgggtatattgagttc
tatgatgtaatgtcagtccctatggcaatagcactctctggacagcctcttcttggtcaa
ccggtgatggtgaaaccatcagaagctgagaagaatcttgttcagtcaactacattggtg
gcagctggacagacaggtccatattctggtggggctagaaggttgtatgttggcaaccta
catttcaacattacagaagatcaacttcgtcaggtttttgaaccttttggttctgtggag
ctggttcagttgcctcttgacgaaactggtcattgtaaaggttttggttttgtccagttt
gcccgtctagaagatgctaagaatgcattgaatttgaatggacagctggagattggaggt
cgagtaatcaaggtatcaaccgttaccgatcaaggtttattggaagatgttgggacaaat
gccgctgatcttgatgatgacgaaggtggtggcttgtctctgaattcatcctctcgagca
cttctcatggcaaagttggatcgcagtggcactgcatcaagtattactggttcggtaggc
gttgctggtaatagcactggcctaactgctacaacagcaacagtccttggtgctgcacct
gcggtaccatcccttgttccccctactctacaggcccatgttcgtactatctctggactt
ccaggtgtgggtctacaactccctagtaatggcatccctactatcgacacaattggaacc
ccaagcgaatgcctattgttaaagaatatgtttgatccagatctggagacggaaccagat
tttgatttggacatcaaagaagatgttcaagaagaatgttcaaaatttggaaaattgaag
catatatatgtggacagggacagtgctggttttgtctacctacggttcgaagatacacag
gctgcgatgagtgctcaacggaacctacatggaagatggtttgctgctaaaatgattact
gctacattcatggtgcctcaaacctacgaggcaaagtttccagacagcaagagattgttg
gaatga
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