Theobroma cacao (cacao): 18607966
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Entry
18607966 CDS
T02994
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03015
mRNA surveillance pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18607966
09123 Folding, sorting and degradation
03018 RNA degradation
18607966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18607966
03041 Spliceosome [BR:
tcc03041
]
18607966
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
18607966
mRNA cycle factors
Stress granule specific factors
18607966
Spliceosome [BR:
tcc03041
]
Complex C
Other components
Complex C specific factors
18607966
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_MUD2_C
RRM_ACIN1
RRM_3
RRM_Nup35
RRM_7
Nup35_RRM_2
RRM_RdRP1_2
SET_assoc
YflT
RRM_MARF1
RBD_DGKtheta
GH97_C
DUF5062
PABC_AtC3H46
C16C6_04
Motif
Other DBs
NCBI-GeneID:
18607966
NCBI-ProteinID:
XP_017970875
LinkDB
All DBs
Position
2:complement(5233756..5238305)
Genome browser
AA seq
645 aa
AA seq
DB search
MAQVQVQGQNGSVNNGAGGGNNQFVTTSLYVGDLDLSVTETQLYEYFTQMGQVVTVRVCK
DLSTRRSLGYGYVNYSNPQDAARALDLLNFTLLNGKPIRIMYSNRDPSLRKSGAGNIFIK
NLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLL
NDKQVYVGHFVRKQERDTAISKTKFNNVYVKNLSESTSDEDLKNIFGEFGTITSAVVMRE
PDGKSKCFGFINFENADDAARAVESLNGKKFDDKEWFVGKAQKKSEREVELKLRFEQTMK
EAADKFQGANLYVKNLDDSISDENLKELFSQYGTITSCKVMRDPNGISKGSGFVAFSTPE
EASRALVEMNGKMIVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMPPSVAPRMPMYPPG
GPGLGQQIFYGQAPPAIFPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGG
RRAGAVQQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVSMPNVAGGMLSVPYDMGGMPMR
DVPLSQPIPIGALASALANASPDQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEV
LHLLESPEALKAKVAEAMEVLRSVAQQQQTGEQLASLSLNDNLVS
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggttcaggttcaggggcaaaatggaagtgttaacaatggagcaggaggaggg
aataaccagtttgtaacgacgtcgctctatgttggggatttggatttgagtgtgacggaa
acgcagctttatgagtactttacccagatgggtcaagtggtcacggttcgggtttgcaag
gatttgtcaacccgcaggtctcttggttatggctatgtcaactatagcaaccctcaagat
gctgcaagggcattggatcttctgaatttcactcttctaaatggaaagccaatccggatt
atgtattccaaccgtgaccctagtctccgtaagagtggcgctgggaatatatttatcaag
aatttagataagggaattgaccacaaagctttgcatgatacattttctgcattcggaaac
attctctcttgcaaggtagccacagactcctctggccagtcaaaaggttatggctttgtc
caatttgacaatgaggaatctgcccaaaaagcaatagagaagttgaatggtatgctattg
aatgataagcaagtctatgtgggccactttgttcgcaagcaggaaagagacactgctatt
agcaagacaaaatttaacaatgtctatgtaaagaatctctcagaatcaacaagtgatgaa
gatttgaagaacatttttggcgaatttggtacaatcactagtgctgtagtgatgagggaa
ccggatgggaaatccaagtgctttgggtttattaactttgagaatgcagatgacgctgct
agagctgttgaatccctcaatggaaagaaatttgatgataaggagtggtttgttgggaaa
gctcaaaagaaatctgaaagggaggttgaactgaaacttcgatttgagcagaccatgaaa
gaggcagctgataaatttcaaggagcaaacttgtatgttaagaatttggatgatagcata
agcgatgaaaatcttaaagagctattctctcaatatggaaccataacatcatgcaaggtt
atgcgagaccctaatggaataagtaaaggatcagggtttgttgcattttcaactccagaa
gaagcatctagagctcttgtggagatgaatggcaaaatgattgttagcaaacctctgtat
gttgctctagcacaaaggaaggaagataggagagccaggttgcaggctcaattttctcaa
atgcgaccggttgcaatgccaccttcagttgcacctcgtatgccaatgtacccacctggt
ggtccaggtcttgggcagcaaatattctatggccaagcacctcctgctatttttccacct
cagcctggatttggatatcaacagcagcttgtccctggtatgaggcctggtggggctccc
atgccaaatttctttgtaccgatggttcagcaaggccagcagggtcagcgtcctggtggc
agaagggctggggctgttcagcaaagtcagcaaccggttccattaatgcagcagcagatg
ctaccccgagggcgggtctatcgttatccaccagggcgtggtctacctgatgtttcaatg
cctaatgttgctggaggcatgctttctgttccatatgatatgggtggcatgccaatgcgt
gatgtcccactttctcagccaattccaataggagccttggcctcagcacttgcaaatgct
agtcctgatcagcagagaacaatgctgggggagaatctctatccgcttgttgaacagctt
gagcctgatgcagctgctaaagttacagggatgcttctggagatggatcagactgaggtt
ttgcacttgcttgagtcaccagaagctctaaaagccaaggttgcagaggcaatggaggtt
ctgaggagtgttgctcagcagcagcagactggtgaacaactggcctcattgtcattaaat
gacaaccttgtctcctga
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