Theobroma cacao (cacao): 18608297
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Entry
18608297 CDS
T02994
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18608297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18608297
Spliceosome [BR:
tcc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
18608297
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
CFAP251_N
Beta-prop_EIPR1
Beta-prop_Aladin
PRP4
WDR90_beta-prop_4th
ANAPC4_WD40
DSE1_N
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_WDR41
WD_LRWD1
Beta-prop_NOL10_N
WD40_RFWD3
PAC11
Beta-prop_SCAP
eIF2A
ASA1
Beta-prop_SPT8
WD40_like
Motif
Other DBs
NCBI-GeneID:
18608297
NCBI-ProteinID:
XP_007042972
UniProt:
A0AB32VHW7
LinkDB
All DBs
Position
2:complement(7217479..7221857)
Genome browser
AA seq
572 aa
AA seq
DB search
MEVDDDNSPPTSSAEPSVAVPDSQTTVPTANNTLLQPVQPIVPAVVPPAVVPPIAPLPAI
PPVPVVHPLAPLPIRAPILKPLAPQNGEVKTSDSDSDHEDEGRTAAVDYEISEESRLVRE
RQEKAMQELLMKRRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMIMAKLD
SEGQLEKLMKAHEEEEAAVSAKMEDVEEDIQYPFYTEGPNELLDARIDIAKYSVVKAAMR
VQRAQRKRDDPDEDMDAETDWALRQAGNLVLDCSEIGDDRPLSGCSFSRDGQLLATCSLS
GVAKLWSMPRVSKVSALKGHTERATDVTFSPVHDHLATASADRTAKLWNTDGSLLTTFEG
HLDRLARIAFHPSGKYLGTTSFDKTWRLWDIDSGVELLLQEGHSRSVYGIAFHQDGSLAA
SCGLDALARVWDLRTGRSVLALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKS
LYIIPAHSNLISQVKFEPQEGYYLVTASYDMTAKVWSGRDFKPVKSLPGHEAKVTASDIS
EDSRYIVTVSHDRTIKLWTAGNIGKEKDMDLD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgatgatgacaacagtccaccaacttcatctgcagaaccttcagttgcagtt
cccgacagccaaaccacagtgcctacggcaaataacactctacttcagcctgttcagcct
attgttccagcagtggtcccgcctgcagttgtaccacctattgctccgctacctgccatt
cctccagtccctgttgtgcatccattggcacctctcccgattcgcgctcccatccttaaa
ccacttgcacctcaaaatggtgaggtgaaaactagtgattcagactctgaccatgaggat
gaagggcgaactgctgctgttgattatgagatctcagaagagagtagactggttagagag
cggcaagaaaaggccatgcaagaacttctgatgaaacgacgtgctgctgcactagcagtg
cctactaatgacatggctgtccggactcgacttcgccggcttggtgaacccataactctt
tttggagaaagagagatggaaaggcgggataggctgcgaatgattatggcaaagctggat
tctgaggggcagttggagaagttgatgaaggcgcatgaggaggaagaggctgcagtttct
gctaaaatggaggacgttgaggaagacattcaatatcccttttatactgagggtccaaac
gagctcttggatgctagaattgatattgcaaagtactctgttgtaaaggcagctatgcgt
gttcaacgtgcacagagaaaaagggatgatccagatgaagatatggatgctgaaactgat
tgggctctaaggcaggcagggaatttggttcttgattgcagtgaaattggggatgataga
ccactttccggttgttctttctcacgtgatggacaacttcttgccacctgctcattgagt
ggagttgctaagttgtggtcaatgcctagggtaagtaaggtttctgccttaaagggccac
acagaacgtgcaactgatgttacattttctcctgtgcatgatcatttagcgactgcttct
gctgaccgaacagcaaagttgtggaacactgatggatcactcctgacaacatttgagggc
catttggatcgccttgcacgcatagccttccatccttcagggaagtaccttggcacaaca
agctttgataaaacatggagactgtgggacatagacagtggtgtagagttgcttctccaa
gaaggtcatagtaggagtgtctatggaattgcgttccaccaagatggatctttagcagca
tcctgtggacttgatgcacttgctcgtgtttgggatcttcgcactggtagaagtgttctt
gctttggaaggccatgtcaagccagttcttggtgtgagtttttcacccaatggctaccat
ttagctacaggaggtgaagataatacctgtcgaatatgggatttgaggaagaaaaaatcc
ctctacatcataccagcccactcaaatcttatatcacaagtgaagtttgagcctcaagag
ggatattacttggtcactgcttcttatgacatgactgcaaaggtttggtccggcagagat
tttaagcctgtcaaaagcttaccaggtcatgaagctaaagtcactgcttcagatattagt
gaagatagccggtatattgtgactgtctctcatgatcgaacaataaagctgtggactgct
ggtaacataggaaaggaaaaagatatggatttggactga
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