Theobroma cacao (cacao): 18608413
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Entry
18608413 CDS
T02994
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tcc04812
]
18608413
Cytoskeleton proteins [BR:
tcc04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
18608413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Katanin_con80
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_WDR75_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT140_1st
eIF2A
Beta-prop_IP5PC_F
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_VPS8
PROPPIN
VPS8_N
Motif
Other DBs
NCBI-GeneID:
18608413
NCBI-ProteinID:
XP_017971236
UniProt:
A0AB32VZA6
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Position
2:complement(7918321..7926189)
Genome browser
AA seq
855 aa
AA seq
DB search
MTTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS
GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNIVKVWDLTAGKLLHD
FKYHEGQIQCLDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETTGVRCLTFNPDGR
TVLCGLHESLKVFSWEPIRCHDGVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR
IEPYAVGNGNRVNGHSEPKSSSGGSLSVLNENTTKASMGRLSVSQNPDPLMKETKSLGRL
SVSQNSDPAKESKNLASTGNVPGTPQRVNLNIASKTTQPNSVTVPSVAAPKRNSTRATSA
VNVPIFNKSDVIPVIVPRNDTRLEQAAESRKEVGISGRSLEQAAESRREVGIAGRSLEPA
AESRKEAGIVGKTLEQGADSRKELGIVGRTMPFSLQSKATSFRKFQNSREDMDRPAISVM
SETTGSKAAEFGSVPDRNVFPAVKGPIQAMSAAERNVREDRCIGSTKTEPNSVVELPSSY
QDENHDAQVQKTNRDAYPMESQKGGRTRSVVINWEKRGRSSNYDGPTLSISPGNASVANM
PSFNAFKQRGYPPSMEKEMPSASDEDAVADIMEQHDQFISSMQSRIAKLQVVHRYWERTD
IKGAISAMEKMADYAVVADVMTIITEKMDIVTLDICTCLLPLLSGLLGSDMDRHLSISLD
MLLKLIRVFGSMIYSTLSASTPVGVDIEAEQRFERCNLCFIELEKVKRCLPTLTRRGGSV
AKSAQELNLAIQEVS
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgactaccaaacgagcttacaagctgcaggaatttgtggcacattcttctagtgtgaat
tgcctaaagattggaaggaaatcgtcgagggttcttgtgactggaggggaagatcacaag
gttaatctttgggctattggtaaacccaacgccatactgagtttgtcaggacacacaagt
ggaatagactcagtgagctttgattcttcagaagtcttggtagctgcaggtgctgcaagt
ggtaccatcaagctttgggatttagaggaggcaaaaattgttcggactctgactggtcat
agatccaattgcatctctgtggacttccacccctttggtgagttttttgcatctggctct
cttgatacaaatctcaagatatgggatatcagaaagaaagggtgtattcacacttacaag
ggccatactcgaggagtcaatgcaattagatttacaccagatggccgatgggttgtatct
ggtggtgaggacaacattgtgaaggtgtgggatttgactgctggaaaattgttgcatgat
ttcaagtatcatgaaggccaaattcagtgcctggatttccatccccatgagtttttactg
gctacaggttcagctgatcggactgtcaaattttgggaccttgaaacctttgagctcatt
ggttcagctgggcctgagactactggagtccgttgcttgaccttcaatcctgatggtagg
actgtactctgtggattacatgaaagtctgaaggttttctcatgggaaccgataagatgt
catgatggtgtggatgtgggatggtctagattgtcagatcttaatgttcatgaaggaaag
cttcttggctgctcatataatcaaagctgtgttggagtgtgggttgtagacatctcgcgc
atagaaccatatgcagttggtaatggtaatcgtgtgaatggtcattctgaacctaaatct
agttcaggtggaagcctctctgtgctgaatgagaacacgacaaaagctagtatgggaaga
ttatctgtttcacaaaatcctgatcctttaatgaaggaaacaaaatcccttggacggttg
tccgtttcacaaaactcagatcctgctaaggagtccaaaaatttggcatccacaggaaat
gtacctggtacccctcagagggtcaatttaaacattgcttcaaaaacaactcagccgaat
tcagtaacagttcctagtgtagcggctccaaagaggaattctacgagggctacttcagct
gttaatgttccaatttttaacaagtcggatgtcatacctgtgattgtgcctagaaatgat
acaaggttggagcaggctgctgaatcaagaaaagaagttggaatatccgggagaagtttg
gagcaggctgctgaatctagaagggaagttggaatagctgggagaagtttggagccggct
gctgaatctagaaaagaagctggaatagttgggaaaactttggagcagggagctgattca
agaaaagaacttggtattgttggaagaacaatgccattttctttgcagtcaaaggcaact
agttttcggaagtttcaaaatagcagggaagacatggaccggccagctatctctgttatg
tctgaaactacaggttctaaggctgctgaatttggcagtgttccagacaggaatgtcttt
cctgctgttaaaggcccaattcaggcaatgtctgctgctgaaaggaatgtgagggaggat
aggtgtattggctccaccaagactgaaccaaactcagtggtggagttgccttcaagctac
caggacgaaaatcatgatgcacaggtgcaaaaaacaaatagagatgcatatcctatggaa
agccaaaaaggaggaagaacacgttcagttgtcataaattgggagaaaagagggagatct
tctaattatgatggacctacattgagtatctctccggggaatgcgtctgtggcaaatatg
ccttccttcaatgcgtttaaacaaagaggataccctccctctatggaaaaagaaatgcct
tctgccagtgatgaggatgccgttgcagatataatggagcaacatgatcaattcattagt
tccatgcagtctcgaatagctaagttacaggttgttcatcgatactgggaaaggactgac
ataaagggggcaatcagtgcaatggaaaagatggctgattatgctgtggttgctgatgtg
atgaccattatcactgagaaaatggacattgtcacgttggacatttgcacttgtcttctc
cctcttctgtctggcctccttggaagtgacatggataggcatttgagcatctctcttgac
atgctgcttaagctgatcagagtatttggttcaatgatatattctacattatcagcttca
acacctgttggtgtagacattgaggcagagcaaaggtttgagcgttgcaacctctgcttt
atagaacttgaaaaagtaaaacgctgtctccccactcttaccagaagagggggatcagtt
gcaaaatctgcccaggaattgaatctagcaattcaagaagtgtcatga
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