Theobroma cacao (cacao): 18608514
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Entry
18608514 CDS
T02994
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03013
Nucleocytoplasmic transport
tcc03015
mRNA surveillance pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18608514
09122 Translation
03013 Nucleocytoplasmic transport
18608514
03015 mRNA surveillance pathway
18608514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18608514
03041 Spliceosome [BR:
tcc03041
]
18608514
03009 Ribosome biogenesis [BR:
tcc03009
]
18608514
03012 Translation factors [BR:
tcc03012
]
18608514
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18608514
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18608514
mRNA cycle factors
Stress granule specific factors
18608514
Spliceosome [BR:
tcc03041
]
Complex C
Other components
EJC/TREX
18608514
Ribosome biogenesis [BR:
tcc03009
]
Eukaryotic type
90S particles
Helicases
18608514
Translation factors [BR:
tcc03012
]
Eukaryotic type
Initiation factors
eIF-4
18608514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
18608514
NCBI-ProteinID:
XP_007043317
UniProt:
A0AB32VEY5
LinkDB
All DBs
Position
2:complement(8626402..8629791)
Genome browser
AA seq
406 aa
AA seq
DB search
MAAAGTTSRAARRMGAEDDKLVFETTEGIEPILSFDQMGLKDDLLRGIYNYGFEKPSAIQ
QRAVMPIINGRDVIAQAQSGTGKTSMIALTVCQVVDTASREVQALILSPTRELASQTEKV
IRTIGDFMNIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLI
LDESDEMLSRGFKDQIYDVYRHLPPELQVCLISATLPHEILEITSKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVS
SMHGDMPQKERDAIMDEFREGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggggacaacgagccgagcggctcggaggatgggagccgaggatgacaag
ctagttttcgagacgacggaaggaatcgagccgatactcagtttcgatcagatggggcta
aaagacgatctcctccgtggaatctacaattacggctttgaaaagccatcggcaatccag
cagagagccgtgatgccaataatcaacggccgcgatgtgattgctcaagctcagtctggt
accggcaaaacttccatgattgctctcaccgtttgccaagtggtcgacaccgctagcaga
gaggttcaagcattgatcttgtcgccgacaagggaactggcatctcaaacggagaaagtg
atacggacaattggtgattttatgaatatacaagcacacgcatgtattgggggcaaaagt
gtgggcgaagatataagaaagctagaaaacggagttcatgtagtgtcaggaactcctggt
agagtttgtgatatgatcaagaggagaaccctgcgtacgagggctattaaactattgatt
cttgatgaatctgatgagatgttgagccgagggttcaaagatcaaatttatgatgtttac
agacatcttccaccagagcttcaggtttgtttgatatctgctaccctccctcatgaaatc
ttggaaataacaagcaagtttatgacagatcctataaggatcctcgtgaagcgtgatgag
ttgactctggagggaattaagcaattttttgttgcagttgaaagagaggagtggaagttt
gatacgctatgtgatctttatgatacactgacaatcacccaagctgttattttctgcaat
acaaaacgaaaggttgattggcttactgagaagatgcgtagcaataactttacggtatca
tcaatgcatggggatatgcctcagaaggaaagagatgcaattatggatgagtttcgagaa
ggtgctacccgtgttcttatcacaacagatgtttgggccagggggcttgatgttcaacag
gtgtccctggtgatcaattatgaccttccaaacaatcgagagctttacatccataggatt
ggtcgttctggtcgttttggacgaaagggtgttgctattaattttgtaaaaagtgacgac
atcaagattcttagagatatagagcagtattacagtacgcagatcgatgaaatgccaatg
aatgttgcggatctgatataa
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