Theobroma cacao (cacao): 18609077
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Entry
18609077 CDS
T02994
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18609077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18609077
03012 Translation factors [BR:
tcc03012
]
18609077
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18609077
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18609077
Translation factors [BR:
tcc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18609077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
Dicer_dimer
nSTAND3
TFIIA
ATPase
T2SSE
NACHT
Motif
Other DBs
NCBI-GeneID:
18609077
NCBI-ProteinID:
XP_017971361
UniProt:
A0AB32VXV5
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All DBs
Position
2:19207018..19236298
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AA seq
1232 aa
AA seq
DB search
MPSSSLLSLSSSPHFLPSSPHPCTKTLKPLLLCPTMKDRPPSSYGSVYIPPHHRLRSVIS
SSNNNASKTGADFSTSASVIQPKLIDRKNAPVLSARDTAAAAPPPSPSPFLQQPQQQQQQ
RTYNSNNSSKNSNNNNSQYNSAYDDGISEDGSDRELNLSLQSGTFSYANIDEWKRKLAIL
LRNDEKQELVSREKKDRRDFEQIAALASRMGLYSHLYSKVAVFSKVPLPNYRFDLDDKCP
QREVNLNFGLLKRVDAYLGEYLFQKSRTKESFPDNCFSRSSSNSSIVTDEGLVEQPEPLA
SSSAVMEKILWRRSLQLRDQQQAWQESLEGARMLEFRQILPAYKEKDAILSVILQNQVVI
VSGETGCGKTTQIPQFILESEIDSVRGAVCSIICTQPRRISAISVSERVASERGEKLGES
VGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVL
KDLLPRRPELRLILMSATLDAELFSSYFGGAPLIHIPGFTYPVQTHFLENILEMTDYRLT
PYNQIDDYGQERMWKMSKQAPRKRKSQIASTVEDALRAADLKDFSPQTRESLSCWNPDCI
GFNLIEYLLSYICENERPGAVLVFMTGWDDIISLKDKLLAHPILGDPSQVLLLTCHGSMA
SSEQKLIFQEPEDGVRKIVLTTNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPS
WISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFSEYQLPEILRTPLQSLCLQIKSLKLG
SISEFLSRALQSPELLAVQNAIEYLKIIGALDENENLTVLGRYLTMLPMEPKLGKMLILG
AILNCLDPVLTIVAGLSVRDPFLTPSDKKDLADAAKLQFSSDYSDHLALVRAYEGWKEAE
KDLAGYDYCWKNFLSAQSMKAIESLQKEFLSLLKDTGLFDGNATNHNAWSYDQQLIRAII
CYGLYPGICSVVHNEKSFSLKTMEDGQVLLHSNSVNARESRIPYPWLVFNEKIKVNSVFL
RDSTAVSDSVLLLFGGSISRGDVDGHLKMLGGYLEFFMQPAIAEKYQTIRREFDELIQNK
LLNPQMVLHFHHELISAVRLLVSEDQCDGRFVFGRQVLKPTKMPVMPQQPTLVSRTESGP
GGDNSKSQLQTLLTRAGYAAPTYKTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAA
AEALQWLMGGTQTGREYINHMSMLLKKSKRDH
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgccctcttcttctcttctctcgctctcttcctctccacatttccttccttcctctccg
catccttgcaccaaaaccctaaaacccttactcctttgtcccacgatgaaggatcggcct
ccgtcctcctacggctccgtttacatccctccccaccaccgtctccgttccgtcatatct
tcttccaacaacaacgctagcaagaccggagcagatttttccacctccgcgtccgtgata
cagcccaaactcattgaccgtaaaaacgcccccgttttgagcgctagggacactgctgct
gctgctcctcctccttctccttcgcctttcttgcaacaaccgcagcaacagcaacagcag
aggacttataatagcaataatagcagtaaaaatagtaataataataattcgcagtataat
tcagcttatgatgacgggatttctgaggatggctctgatcgggagctcaatttgtcattg
caatcgggtactttcagttatgctaacattgatgagtggaagcggaagctagccatactt
ttacgtaatgacgagaaacaggagttggtctcgagggagaagaaggacagacgagacttt
gagcaaatagcagctttggcaagcagaatgggtttgtatagccatctttattccaaagtt
gctgtcttcagtaaggtccccctgcctaactacagatttgacctggatgataagtgtcca
cagagggaggtgaacttaaattttggtttgttgaagagagttgatgcctatcttggagag
tacctttttcaaaaatctaggactaaggaaagctttccggacaattgtttctcgagatca
agcagtaatagcagtatagttactgatgaaggacttgttgagcagcccgagcccctggca
tccagctcagctgtcatggagaaaattctttggcggagaagtttgcagctgcgtgatcag
caacaagcgtggcaggagtctcttgagggggcaagaatgctagaatttcgtcaaattctt
cctgcttacaaagagaaggatgctatattgtcagtcattttgcagaaccaggttgttatc
gtctcaggtgaaactgggtgtggcaagaccacacaaattccccaatttattttagaatct
gaaatagattctgttcgcggagctgtttgtagcattatatgtacacaacccaggcgaata
tctgctatatctgtttcagaaagagttgcttcagagagaggagagaaattgggtgaatct
gttggatataaagtacggcttgagggtatgaaagggagggatacccaccttctcttttgc
accacaggcattttgttgaggaggctgcttgttgatagaaatttgaaaggtgtaacacac
gtcattgtggatgagattcatgaacgtgggatgaatgaagatttcctgctcattgtcctt
aaagatctcctaccccgccgcccagaattaaggctgattttgatgagtgcaactctagat
gctgagcttttctcatcatattttggtggggctcctttaatccacattcctggttttacg
tacccagttcaaacacattttttggagaatattttggagatgacagattacaggttgact
ccatataatcaaattgatgattatggtcaagaaaggatgtggaaaatgagcaagcaagca
ccaagaaagaggaagagtcaaattgcctccactgttgaggatgcactccgggctgcggat
ttgaaggattttagccctcagactcgggagtctttgtcatgttggaatcctgattgcatt
ggttttaatctcatagaatatcttttatcctatatctgtgagaatgaaaggcctggtgct
gttctagtttttatgactgggtgggatgacataatttctctgaaggataagctgctagct
catcctatccttggagatcctagccaagttttgttgcttacttgccatggttctatggcc
agttctgagcagaagttaatttttcaagagcctgaagatggagtgagaaaaatcgtgtta
actactaatattgctgagacaagcatcaccattaatgatgttgtttttgttcttgattgt
ggaaaagcaaaagagacatcctacgatgcactgaataacactccttgtttgctaccatca
tggatttccaaggtttctgctcaacaaagaagaggaagagcaggccgagttcaaccagga
gaatgttaccatctctatcctcgatgcgtatatgatgccttcagtgaatatcaattacct
gaaattttgagaacacctttgcagtctctttgtctgcaaatcaaaagtttgaagctcgga
agtatatctgaattcctatcaagggcattgcagtcaccagagttactagcggttcaaaat
gccattgaatatttaaagatcattggggctttggatgagaacgaaaatctgactgtgttg
gggcgttatttgactatgcttccaatggagccaaaacttgggaagatgctaatcctaggt
gctattcttaattgcctggatcctgtattaactatcgttgctggtcttagtgttcgagat
ccatttttgacaccatcggacaagaaagatcttgcagatgctgcaaaattgcagttttcc
agtgattacagtgaccaccttgcccttgtccgtgcctatgagggctggaaagaagctgag
aaagaccttgctggatatgattattgctggaaaaattttctttctgcacaatcaatgaag
gctatcgagtctcttcagaaggagttcctttctttgctcaaggatactggtctttttgat
ggcaatgcaactaaccataatgcatggagctatgatcagcagctcatccgagcaattatt
tgttatggactgtatcctggaatttgctctgttgtgcacaatgagaaatcgttttcacta
aaaactatggaggatggacaggtgcttctacactcaaactctgttaatgctcgggaatct
agaattccatatccttggcttgttttcaatgagaagataaaagtgaactctgttttcctg
cgggattcaacagctgtctctgattcagtgcttctcctgtttggagggagcatctcaaga
ggagatgttgatggacacttgaagatgttgggcggatatttggaatttttcatgcaacct
gctatagcagaaaaatatcaaaccataaggagagaatttgatgagctgattcaaaataaa
ttactgaatccccaaatggtcctacatttccatcacgagcttatttctgctgtacggttg
ctggtttctgaggatcagtgtgatggaagatttgtatttggccgtcaggtccttaaacca
acaaaaatgcctgttatgccacaacagcctactttggtctcaaggacggagagtggacct
gggggtgataattctaaaagtcagcttcaaacactgctcactagagcaggatatgctgcg
ccaacctataagacaaagcaattgaaaaacaatcagttccgagccactgtggagttcaat
ggtatgcaaatcatgggacagccttgcaacaacaagaagagtgcagaaaaagatgcagca
gctgaggccctgcagtggctgatgggtggtacccagacaggccgtgaatatatcaatcac
atgtcgatgttgctgaagaaaagcaagagggatcactga
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