Theobroma cacao (cacao): 18610021
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Entry
18610021 CDS
T02994
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03013
Nucleocytoplasmic transport
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18610021
09122 Translation
03013 Nucleocytoplasmic transport
18610021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18610021
03041 Spliceosome [BR:
tcc03041
]
18610021
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
18610021
Spliceosome [BR:
tcc03041
]
Complex C
Other components
EJC/TREX
18610021
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
18610021
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
LIM_bind
Motif
Other DBs
NCBI-GeneID:
18610021
NCBI-ProteinID:
XP_007045493
LinkDB
All DBs
Position
2:37973248..38000936
Genome browser
AA seq
1853 aa
AA seq
DB search
MSLPPIECMYITEEILREGKSGNSNFSFSSSVPMLRFLYELCWTMVRGELPFQKCKAVLD
AVEFTERVSEDELGSCFADIVTQMAQDLTMAGEYRTRLIKLAKWLVESSLVPLRLFHERS
EEEFLWEAEMIKIKAPDLKVKEVRVNTRLLYQQTKFNLLREESEGYAKLITLLFRGSEDS
TQNASTARIGVIKSLIGHFDLDPNRVFDIVLECYELQPDKDAFLQLIPIFPKSHASQILG
FKFQYYQRMEVNTPTPFGLYKLTALLVKEEFIDLDSIYTHLLPKDDETFEQFNSFSTKRL
DEANKIGKINLAATGKDLMEDEKQGDVTIDLFAALDMETEAVAERTPELENNQTLGLLTG
FLSVDDWYHAHILFDRLSPLNPVAHVQICKGLFRLIEKSISLAYDIVRQTHLQNFGSSSG
PGVDNMDTSTSASSSFIDLPKELFQMLATVGPHLYSDTLLLQKVCRVLRGYYLSALELVA
SAGGVSNAETAAGGYQNPRLHLKEARSRVEETLGACLLPSLQLVPANPAVGQEIWEVMNL
LPYEVRYRLYGEWEKDDERNPTILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHAN
PMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNL
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIHQMANVQFTEN
LTEEQLDAMAGSETLRFQATSFGVTRNNKALIKSTNRLRDSLLPKDEPKLAIPLLLLLAQ
HRSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPAAAYAQLIPSLDDLVHLYH
LDPEVAFLIYRPVMRLFKRQGSSDVFWPLDDNETGNITMAYSESESKDDLSRVILDLGPP
RKPIVWSELLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEIAKQHAALK
ALEELPDNSSSAINKRKKDKERIQEALDRLTSELHKHEENVASVRRRLTYEKDKWLSSCP
DTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPM
ICCCTEYEAGRLGRFLYETLKIAYYWKADESIYERECGNMPGFAVYYRYPNSQRVTYGQF
IKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKS
DEREDLKVLATGVAAALAARKSSWVTDEEFGMGYLELKPATSLASKSLAGNTVSVQNGSS
INVSQSEAAGGRAVALGTQQSDVNLVKDQIPRTKSDGRLERAENVSLGKSDLKTKGGTSA
NGSDAVLSVVLATSQAGTGKSLENQKQLDESSNKLDEHLAKVPAKNSAELESKASAKRSA
PAGSLTKTQKQDPGKDDGKSGKAVGRTSVTCVIDRDVPSHTEGRQGGTTNVPSAVTSNGN
AVSAPPKGKDDGSELPDASRPSSRIVHSPRHDSSATVSKSSDKLQKRTTPVEETDRLTKR
RKGDVELKDLDGEVRLSDRERSTDPQLADFDKPGTDELTSHRAVDKPLDRSKDKGSERHD
RDYRERLERPEKSRADDILTEKSRDRSIERYGRERSVERSTDRNLERLGDKAKDERSKDE
RSKVRYADTSTEKSHVDDRFHGQSLPPPPPLPPHMVPQSVNATGRRDDDPDRRFGSTRHS
QRLSPRHEDKERRRSEENSLVSQDDGKRRREDDFRERKREEREGLSMKVEERDRDRERDR
EKASLLKEDVDANVAKRRKLKREHLPSEPGEYSPIAPPPPPLAIGMSQSYDGRDRDRKGS
MMQRGGYLEEPGMRIHGKEAASKMARRDTDPMYDREWDDEKRQRPEPKRRHRK
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccctcctatagagtgtatgtacataacagaggaaatacttcgcgagggaaaa
agtggaaactcaaacttctccttctcttcctccgttcccatgcttcgctttctctacgag
ctctgctggaccatggtgcgtggggaattgccgtttcagaagtgcaaagcggtgttggat
gcggtggagtttacggagagagtatcggaggatgagttgggttcatgctttgctgatatc
gtcacgcaaatggctcaagaccttacaatggctggagaataccgcactcgtttgataaaa
ttggcaaagtggctggtagagtcttcgttagttccattaaggcttttccatgagcgcagt
gaggaagagttcctgtgggaggctgagatgatcaagataaaggctccagatttgaaggtt
aaagaggtcagagtaaatacgcgtctgctttatcagcaaacaaaatttaacctccttaga
gaagagagtgagggctatgctaagctgattactctcctttttcgaggttctgaagattca
actcaaaatgcatcaacagcaagaataggcgttataaagtcattaattgggcattttgat
ctggacccgaaccgtgtttttgacattgtgttggagtgttacgaacttcagccagataag
gatgcttttttgcaattgattcccatcttcccaaagtctcatgcttcacaaattcttggt
tttaagtttcaatactatcagcgcatggaagtaaatactcctaccccatttgggctctat
aagcttacggctttgctagtgaaggaagagttcattgatcttgatagcatctacactcat
ttacttcccaaggatgatgaaacatttgagcagtttaacagtttctccacaaaacgactt
gatgaggctaacaaaattggaaaaataaatcttgctgctactggtaaggatctcatggag
gatgagaaacaaggagatgtaacgatagaccttttcgctgctctagatatggaaactgag
gctgtcgctgaaagaactccagagcttgaaaataatcagactttaggcttacttactggc
tttctttctgtagatgattggtaccacgcccatatcctgtttgatcgcctttcaccactt
aatccagtggcacatgttcaaatctgtaaaggattgtttaggctcattgaaaagtcaatc
tctttagcatatgatattgttcgccaaacacatctccaaaactttggatcatcctcagga
cctggtgttgataacatggatacaagtacatcagccagtagctcctttattgatcttcct
aaggaactctttcagatgttggcaactgttggacctcatctctacagtgatactttgctg
ttgcagaaggtatgcagagttttgagaggttattacttatctgcccttgagcttgtagct
agtgctggtggagtctcaaatgctgaaacggctgctggtggatatcaaaatcctcgtctt
cacttgaaggaagctaggtcaagggtagaggaaacattaggagcatgtctacttccttct
ttgcaattggtacctgcaaatccagcagttgggcaagagatctgggaagtaatgaatctc
cttccctatgaggtgcgataccggttatatggggagtgggaaaaggatgatgagcggaat
cctactatattagctgcaagacaaacagccaagcttgacactaggaggattttgaaacgg
ctggctaaggaaaatttgaagcagttaggccggatggttgcaaaacttgctcatgctaat
ccaatgactgtgctgcgaacaattgttcaccagattgaggcatacagggatatgattact
cctgtggttgatgcattcaagtatttgacacagcttgagtatgacattttggaatatgtt
gtgattgagcgactggcacaaggagggcgtgataaactgaaggatgatggccttaatttg
tcagactggcttcaatctttggcatcattttggggtcacctgtgtaagaaatacccatca
atggaactgaggggtcttttccagtatctggttaatcagttaaaaaagggccaaggaatt
gaacttgttctcctgcaggagcttattcatcaaatggcaaatgtacaattcacagagaat
ctgactgaggagcagttggatgccatggctggaagtgagactcttcgatttcaggccact
tcatttggcgtaactcgaaataataaggcattgattaaatccaccaataggctgagagat
tcattgcttccaaaggatgaaccaaagttggcaattccacttttgttacttttagcccaa
catcgttctttggttgtcataaatgcagatgctccttacattaagatggttagtgagcag
tttgacagatgccatgggactcttcttcagtatgtagaatttctctgtagtgcagtaaca
ccagctgctgcttatgctcaactgattccctcgcttgatgaccttgtccacctgtaccac
cttgatcctgaggttgcatttttgatatatcggcctgtgatgaggctcttcaagcgtcag
gggagttctgatgttttctggcctttagatgacaatgaaactggaaatattactatggca
tactcagagtctgaaagtaaagatgatttgagccgagtgatactagatttgggtccacct
cggaagcctatagtgtggtctgaacttcttgatactgttaaaaccatgttgccttctaaa
gcctggaatagtctctctcccgacctctatgctactttttgggggcttactctgtatgat
ctttatgttcccagaaaccgttatgagtctgaaatcgcaaagcagcatgctgctcttaag
gctctggaagagcttcctgataattctagttcagcaattaacaaaaggaaaaaagacaag
gaaagaattcaagaagctttagatcgtctaactagtgaacttcataagcatgaagaaaat
gttgcatctgttcgtagacggcttacttatgaaaaggacaagtggttgagctcctgccct
gatacactgaagattaacatggagttcctccagcgttgtatatttcctcgctgtaccttc
agtatgccagatgctgtctattgtgccatgtttgtgcacactcttcattctcttggcacg
ccttttttcaacacagtaaatcacattgacgttttgatatgcaaaaccttacaacccatg
atatgctgctgcactgagtatgaagcaggaagacttgggaggtttctatatgaaacgcta
aagattgcatactactggaaggcagatgaatccatttatgagcgtgaatgtgggaatatg
cctggctttgctgtgtattatagatatccaaacagtcagcgtgttacatatggacagttc
attaaggtacattggaaatggagtcaaagaataacaaggctgttgatccagtgcttggag
tcaactgagtacatggagattcgtaatgctttaataatgttgacgaaaatttctagtgtt
tttcctgttaccagaaagagtggaattaaccttgaaaaacgggtggccaaaatcaaaagt
gatgaaagagaggatctcaaggtgttggcaactggtgttgctgcagctttggctgctaga
aagtcttcatgggttacggatgaggaatttggaatgggatatcttgagctgaagcctgct
acatcacttgcttcaaaatctttggctggtaatacagtttctgtacaaaatggttcatca
attaatgtttctcagagtgaggctgctgggggcagggcagttgccttaggaacccaacag
tcagatgtgaatttggtcaaggaccagattccaagaacaaaatctgatgggcggttggaa
agagcagaaaatgtctctcttggtaaatctgatctgaaaacaaaaggtggtacatcagcc
aatggttctgatgctgtgttatctgttgtcttagctacttcacaagctggaacaggaaaa
tcacttgaaaatcagaaacagctagatgaatcttcaaataaattggatgagcacttggcc
aaagttcctgcaaagaactctgcagaattggagtccaaagcctcagccaaacgctcagca
cctgctggatcacttacaaagacacagaagcaagatcctggaaaagatgatggcaagtct
gggaaagctgttggaagaacttctgtgacctgtgtcattgacagagatgttccctctcat
acagagggcagacaaggtgggactacaaatgttccttcagctgtcacttccaatggtaac
gcagtttctgctccacctaaagggaaagatgatggctctgaactcccggatgcatcaagg
ccatcttctcgaattgttcattctcctaggcatgatagttctgctactgtttcaaagtcc
agtgataagctgcaaaagagaaccactccagtggaagagactgatagattaactaaacgc
cgcaaaggggatgttgaattgaaagatctggatggtgaagttcgattatctgacagggag
aggtccacagaccctcaattggcagattttgacaagccaggaactgatgaactaacaagc
cacagggccgtggataagcctttggataggtcaaaagataagggaagcgagagacatgat
agggattacagagaaagattggagcgtcctgaaaagtctcgtgcagatgatattttgact
gagaaatcaagagatagatcaattgagagatatggaagagagcgttctgttgagagaagc
accgataggaatttggaaagacttggtgacaaagctaaggatgagcgcagcaaagatgaa
agaagtaaagtacgatatgctgatacatccacagaaaagtctcatgttgatgatcggttt
catgggcaaagcttgccgccaccaccacccttacctcctcatatggtcccacaatctgtt
aatgctactggtagaagggatgatgatcctgacagaaggtttggaagtaccagacattct
cagagactctctccaagacatgaagataaagagcggagacgatcagaggaaaattccttg
gtttcccaggatgatggaaagcgcagaagagaggatgactttcgtgagagaaagcgagaa
gaaagagaggggttgtcaatgaaggtggaagagagggacagagacagggagagggacaga
gagaaagcaagccttttgaaagaggatgtggatgctaatgttgccaaaaggcggaaactc
aagagagagcatttgccatcagaacctggggaatattctccaattgcccctccacctcca
cctcttgctattggtatgtcacaatcatatgatggaagagatagagaccgaaagggttcc
atgatgcagcgtgggggttacttggaggaaccaggcatgaggattcatggtaaagaagcg
gctagcaagatggctcgtcgtgacacagacccgatgtacgaccgggaatgggatgatgag
aaaagacaaagacctgagccaaagcggaggcatcggaagtag
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integrated database retrieval system
