KEGG   Theobroma cacao (cacao): 18610071
Entry
18610071          CDS       T02994                                 
Name
(RefSeq) probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18610071
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcc03041]
    18610071
Spliceosome [BR:tcc03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    18610071
 Complex B
    18610071
 Complex C
   U2 SnRNP specific factors
    18610071
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin
Other DBs
NCBI-GeneID: 18610071
NCBI-ProteinID: XP_017971147
UniProt: A0AB32VV24
LinkDB
Position
2:38300329..38303723
AA seq 818 aa
MPGVMPILPLPAPPSDGDLGPLPPSQVPAEDQIEEKPTNEEQNKANSIATHTRTIGIIHP
PPDIRNIVDKTAQFVAKNGPEFEKRIIANNANNAKFNFLTSSDPYHAYYQHRLSEFRAQN
QNQSNSQQQQSPLEPVDSAPTESAPTAGGGGNEVEAAGAKPDPAAQFRPPVRKNLEPPEA
AQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFLRPTHSMFTFF
TELADAYSKVLMPPKGLTEKLRNSIADMTTVLERCLHRLEWEHSQEQARQKAEDEIEQER
MQMAMIDWHDFVVVETIDFADDEDEDLPPPMTIEEVIRRSKISATEEDEIVEPGKEVEME
MDEEEVQLVEEGMRAASIEENDGEKKETRAYEEPEPPMRIVKNWKRPEERIPAERDPTQF
VVSPITGELIPINEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARL
RPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQAMSQTIMGEDQNDA
ANSNVQNLPGPAAPPPRPGVPSVRPLPPPPGLALNLPRVPPNAPQYSAASSGGLPMPLPQ
PRPLGVPMMPTIRPAPPPMQMASGQPPMIMNRPPQMPPSMSMNLANFPVPPPPGSQFTPV
SVPRPYAPLPVAPPAMPMMQPPPPLPQGIPPPPPPEEAPPPLPDEPEPKRQKLDDSMLVP
EDQFLGQHPGPARITVSVPNLDEGNLKGQLLEITVQALSETVGSLKEKIAGEIQLPANKQ
KLSGKAGFLKDNMTLAYYNVGAGETLALSLRERGGRKR
NT seq 2457 nt   +upstreamnt  +downstreamnt
atgccaggggtaatgccaatattgcccctcccggcaccgccttcggatggggatttgggg
cctttacctccatctcaggtgccggcagaagatcaaatcgaagagaaaccaaccaatgag
gagcaaaacaaagccaattcgattgcgacccacactagaactattggaatcattcatccc
cctccagatattaggaacattgtcgataaaactgctcagtttgttgcaaaaaatggaccg
gaattcgagaaaagaatcattgccaataacgctaacaatgctaagttcaatttcttgact
agttcagatccctaccatgcttattatcaacataggttgtcagaatttcgtgctcagaat
cagaaccagtctaactctcagcagcagcaatcgcctttagagccagtggattctgctcca
actgagtctgctccaactgctggtggtggtgggaatgaagtggaagcggcaggagctaag
cctgatcctgctgcacagttcagaccacctgtgaggaagaatcttgaaccaccagaagct
gctcaatatactgttagacttcctgaagggattacaggggaagaattggatattattaag
ctaactgcacagtttgttgcacgaaatgggaaatcatttttgacgggactgactagtagg
gagattaacaaccctcagtttcattttctaaggccgactcatagtatgtttacctttttc
actgaacttgcggatgcttattccaaagtgttgatgcctccaaagggtttgacagagaaa
ttgaggaatagtattgctgatatgacaactgtgcttgagaggtgcttgcatcggctagaa
tgggaacactcccaggagcaggcaaggcagaaagctgaggatgaaattgagcaggagaga
atgcaaatggcaatgattgattggcatgattttgttgtggttgagactatagactttgct
gatgatgaggatgaggacttacctcctccaatgaccattgaggaggttataaggaggagc
aagatatctgctacggaagaagatgaaattgttgagcctggaaaggaggtggaaatggaa
atggatgaagaagaggtacagcttgttgaggaaggtatgagagctgctagcattgaagag
aatgatggcgagaagaaagagacaagggcatatgaggaaccagaaccaccaatgagaatt
gtgaagaactggaaaaggcctgaggagagaatccctgcagaaagagatccgacccagttt
gttgtttcaccaataactggcgagctaattcccattaatgagatgtctgagcacatgaga
atttccttaattgatcccaagtataaggagcagaaagaaaggatgtttgcaaagattagg
gagacaactcttgcacaggatgatgagatatcaagaaacattgtgggacttgcacgctta
cgtcctgatatctttggtactactgaggaagaagtttctaatgctgtcaaggcagagata
gagaaaaagaaagatgagcaaccaaaacaggttatatgggacggtcatactggaagcatt
ggacgcactgcaaatcaagctatgtctcaaactatcatgggagaggatcaaaatgatgct
gccaatagcaatgtacagaaccttccgggtcctgctgcgcctcctcctcgacctggtgtt
ccatcagttcgtcctctccccccaccacctggactagctttaaatcttcctcgtgttcct
ccaaatgctccccaatattctgcagcttctagtggtgggcttcctatgccattacctcaa
cctcgtccgttaggtgttccaatgatgcccacaattcgtccagcaccacctccaatgcag
atggcatctggccaaccacccatgatcatgaatcggccaccccaaatgcctccatcaatg
tccatgaatctggctaattttcctgtgccccctccaccaggttctcagtttacccctgtg
tcagtacctcgaccctatgcccctcttcctgtcgctccacctgctatgcctatgatgcag
ccgcctccacctttgccccaaggaatacctcctccaccaccacctgaagaagctcctcca
ccacttcctgatgaaccagagccaaagagacagaagcttgatgattccatgcttgttcca
gaagatcagttccttggtcaacatccgggacctgctcgcattactgtgtctgttcccaac
cttgatgaaggtaatctcaaaggacagcttcttgagatcacagtgcaggccttatctgaa
acagttggcagtttgaaggagaaaattgcaggggagatccagctccctgcaaacaaacag
aaattgagtggaaaagccgggtttctgaaggacaatatgacccttgcatattacaatgtt
ggagcgggagaaacactagctctttcattgagggagcgtggtggtaggaagaggtga

DBGET integrated database retrieval system