Theobroma cacao (cacao): 18611192
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Entry
18611192 CDS
T02994
Name
(RefSeq) small RNA degrading nuclease 1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
18611192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tcc03009
]
18611192
Ribosome biogenesis [BR:
tcc03009
]
Eukaryotic type
Pre-60S particles
RNases
18611192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
DEDDh_C
Bap31_Bap29_C
Motif
Other DBs
NCBI-GeneID:
18611192
NCBI-ProteinID:
XP_007047379
UniProt:
A0AB32VPL2
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All DBs
Position
1:complement(3042934..3046698)
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AA seq
514 aa
AA seq
DB search
MDEKLDTAEKKVLVEIVKLVQKRGLKGTEGGWKEFLNSYDKKFGASLSDPSRRSNDVLVS
FLKTFTKADDLKLFDRMLQGHLNRAAVNQIGKQSLGNESPEQRLVRLTLEHPQYPLDYTF
PTGDEGWIITKLPKKSGMLRSNAMVAVDCEMVLCEDGTEALVRVCVVDRDLQVKIDKLVN
PNKAVADYRTEITGVAAGDLDSVTCSVADIQKSMKKLLSNGTILVGHSLHNDLQVLKIDH
ARVIDTSYIFKYLDASISKRPSLNNLCKSVLGYEVRKPGAAHNCLDDACAAMKLVLAKLD
HGDIRLVQEDVPQAEMEKLLLHRIPINVPREEISRVIPGDVAIEMKPSKKAQGRHYAAFA
VFNSPQEANRAFENIEGNEEKDSSGLPQKLVTFQFGKGVTACMYIRKMAQDDSQCQVLSN
KRAFQGEEKSIESKRLKTDQKPVEETMVNFNQFDDHVXEIERLKQELKQKDFRIVMQDKI
ISDLQKKVDKEPYKKQFWGLTYSLSSLYSLASFP
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaaactcgacacggccgagaaaaaggttcttgtcgaaatcgtcaagttagtt
caaaagagaggactgaaaggtacagaaggaggatggaaggagtttttgaattcttatgac
aaaaagtttggtgcttctttgagtgatccgtcgaggcggtctaatgatgttttggtgtct
tttcttaagacatttactaaagcagatgatttgaagctttttgatagaatgttgcaaggc
catttaaatagggccgcggttaatcaaattggaaaacaatctttgggtaatgaatcccct
gagcagaggcttgttcgtttaactttggaacacccacaatatccactagattatacattc
ccaacaggcgatgagggatggatcattaccaagctccctaaaaaatctgggatgttgaga
tcaaatgccatggttgctgttgattgtgaaatggttctctgtgaagatggcacagaagcg
ttagtgagagtttgtgttgtggatcgtgatttacaggtcaaaattgataaacttgtaaat
ccaaacaaagcagtggctgattatcggactgagattacaggagttgctgcaggagatttg
gatagtgtcacttgttcggtagcagacatacagaaatccatgaagaagctgttatccaat
gggactattttagtgggccacagtttacacaatgatctgcaagtgttaaagatagaccat
gcaagagtgattgacacctcatatatcttcaaatatttggatgcatctatctctaaaaga
ccgtctttgaataacttgtgcaagtctgtactgggatatgaagttcgaaagcctggtgct
gctcataactgtctagatgatgcgtgtgctgcaatgaaactagttcttgctaagctagat
catggtgacattcgattggttcaagaagacgtgccccaagctgaaatggaaaagctactg
ctccataggataccgatcaatgttcctagggaagaaatatctagagtcatccctggagat
gttgcaattgaaatgaagccatctaaaaaggctcaaggtcgccattacgctgcgtttgct
gtctttaatagccctcaagaagcaaaccgagcatttgaaaatatagaaggcaatgaagaa
aaggattcatctggactacctcagaaactagttacatttcagtttggcaaaggagtaact
gcttgtatgtacatccgtaaaatggcacaggacgattctcagtgccaagttttgtcaaat
aaaagagcatttcagggtgaggagaaatccatcgagtccaaaaggcttaagacagatcag
aaacctgtagaggaaacaatggtaaattttaatcaatttgatgatcacgtannagagatt
gagaggttgaagcaagaactgaaacagaaagattttcgaattgttatgcaggataagatc
atatctgatcttcaaaagaaggttgataaagagccttacaaaaaacaattttggggctta
acttactcactgagtagtttgtatagtctcgctagtttcccctga
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